Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics
T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
Long noncoding RNAs in plants
AT Wierzbicki, T Blevins… - Annual Review of Plant …, 2021 - annualreviews.org
Plants have an extraordinary diversity of transcription machineries, including five nuclear
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …
[HTML][HTML] Epigenetic regulation of abiotic stress memory: maintaining the good things while they last
As sessile organisms, plants have evolved sophisticated ways to constantly gauge and
adapt to changing environmental conditions including extremes that may be harmful to their …
adapt to changing environmental conditions including extremes that may be harmful to their …
Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis
Temperature profoundly affects the kinetics of biochemical reactions, yet how large
molecular complexes such as the transcription machinery accommodate changing …
molecular complexes such as the transcription machinery accommodate changing …
Natural temperature fluctuations promote COOLAIR regulation of FLC
Plants monitor many aspects of their fluctuating environments to help align their
development with seasons. Molecular understanding of how noisy temperature cues are …
development with seasons. Molecular understanding of how noisy temperature cues are …
Histone chaperone ASF1 mediates H3. 3-H4 deposition in Arabidopsis
Histone chaperones and chromatin remodelers control nucleosome dynamics, which are
essential for transcription, replication, and DNA repair. The histone chaperone Anti …
essential for transcription, replication, and DNA repair. The histone chaperone Anti …
LncRNA FLAIL affects alternative splicing and represses flowering in Arabidopsis
How the noncoding genome affects cellular functions is a key biological question. A
particular challenge is to distinguish the effects of noncoding DNA elements from long …
particular challenge is to distinguish the effects of noncoding DNA elements from long …
Cotranscriptional RNA processing and modification in plants
The activities of RNA polymerases shape the epigenetic landscape of genomes with
profound consequences for genome integrity and gene expression. A fundamental event …
profound consequences for genome integrity and gene expression. A fundamental event …
Transcript elongation by RNA polymerase II in plants: factors, regulation and impact on gene expression
S Obermeyer, H Kapoor, H Markusch… - The Plant …, 2024 - Wiley Online Library
Transcriptional elongation by RNA polymerase II (RNAPII) through chromatin is a dynamic
and highly regulated step of eukaryotic gene expression. A combination of transcript …
and highly regulated step of eukaryotic gene expression. A combination of transcript …
Inositol hexakisphosphate is required for Integrator function
Integrator is a multi-subunit protein complex associated with RNA polymerase II (Pol II), with
critical roles in noncoding RNA 3′-end processing and transcription attenuation of a broad …
critical roles in noncoding RNA 3′-end processing and transcription attenuation of a broad …