[HTML][HTML] Applications of protein engineering in the microbial synthesis of plant triterpenoids
Y Luo, Y Jiang, L Chen, C Li, Y Wang - Synthetic and Systems …, 2023 - Elsevier
Triterpenoids are a class of natural products widely used in fields related to medicine and
health due to their biological activities such as hepatoprotection, anti-inflammation, anti-viral …
health due to their biological activities such as hepatoprotection, anti-inflammation, anti-viral …
Site-directed mutagenesis and substrate compatibility to reveal the structure–function relationships of plant oxidosqualene cyclases
K Chen, M Zhang, M Ye, X Qiao - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to May 2020 Oxidosqualene cyclases (OSCs) catalyze one of the most
complex polycyclization reactions in nature, using the linear 2, 3-oxidosqualene to generate …
complex polycyclization reactions in nature, using the linear 2, 3-oxidosqualene to generate …
End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman
Abstract Motivation Multiple sequence alignments (MSAs) of homologous sequences
contain information on structural and functional constraints and their evolutionary histories …
contain information on structural and functional constraints and their evolutionary histories …
Comparative genomics reveals the diversification of triterpenoid biosynthesis and origin of ocotillol-type triterpenes in Panax
Z Yang, X Li, L Yang, S Peng, W Song, Y Lin… - Plant …, 2023 - cell.com
Gene duplication is assumed to be the major force driving the evolution of metabolite
biosynthesis in plants. Freed from functional burdens, duplicated genes can mutate toward …
biosynthesis in plants. Freed from functional burdens, duplicated genes can mutate toward …
A conserved mechanism affecting hydride shifting and deprotonation in the synthesis of hopane triterpenes as compositions of wax in oat
M Liang, F Zhang, J Xu, X Wang… - Proceedings of the …, 2022 - National Acad Sciences
Triterpenoids are biologically active metabolites synthesized from a common linear
precursor catalyzed by 2, 3-oxidosqualene cyclases (OSCs) to form diverse triterpenoid …
precursor catalyzed by 2, 3-oxidosqualene cyclases (OSCs) to form diverse triterpenoid …
Multi‐omics data‐driven investigations of metabolic diversity of plant triterpenoids
The vast majority of structurally diverse metabolites play essential roles in mediating the
interactions between plant and environment, and constitute a valuable resource for …
interactions between plant and environment, and constitute a valuable resource for …
A structural and data-driven approach to engineering a plant cytochrome P450 enzyme
Functional manipulation of biosynthetic enzymes such as cytochrome P450s (or P450s) has
attracted great interest in metabolic engineering of plant natural products. Cucurbitacins and …
attracted great interest in metabolic engineering of plant natural products. Cucurbitacins and …
Deep learning-based characterization and redesign of major potato tuber storage protein
X Luo, L Cao, L Yu, M Gao, J Ai, D Gao, X Zhang… - Food Chemistry, 2024 - Elsevier
Potato is one of the most important crops worldwide, to feed a fast-growing population. In
addition to providing energy, fiber, vitamins, and minerals, potato storage proteins are …
addition to providing energy, fiber, vitamins, and minerals, potato storage proteins are …
Enhanced chemoselectivity of a plant cytochrome P450 through protein engineering of surface and catalytic residues
X Zhang, W Luo, Y Yao, X Luo, C Han, Y Zhong… - Abiotech, 2021 - Springer
Cytochrome P450s (P450s) are the most versatile catalysts utilized by plants to produce
structurally and functionally diverse metabolites. Given the high degree of gene redundancy …
structurally and functionally diverse metabolites. Given the high degree of gene redundancy …
Disentanglement of Evolutionary Constraints in Statistical Models of Proteins
The exponential growth of protein sequences in the post-genomic era has revolutionized the
application of generative sequence models for pivotal tasks such as contact prediction …
application of generative sequence models for pivotal tasks such as contact prediction …