[HTML][HTML] Applications of protein engineering in the microbial synthesis of plant triterpenoids

Y Luo, Y Jiang, L Chen, C Li, Y Wang - Synthetic and Systems …, 2023 - Elsevier
Triterpenoids are a class of natural products widely used in fields related to medicine and
health due to their biological activities such as hepatoprotection, anti-inflammation, anti-viral …

Site-directed mutagenesis and substrate compatibility to reveal the structure–function relationships of plant oxidosqualene cyclases

K Chen, M Zhang, M Ye, X Qiao - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to May 2020 Oxidosqualene cyclases (OSCs) catalyze one of the most
complex polycyclization reactions in nature, using the linear 2, 3-oxidosqualene to generate …

End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman

S Petti, N Bhattacharya, R Rao, J Dauparas… - …, 2023 - academic.oup.com
Abstract Motivation Multiple sequence alignments (MSAs) of homologous sequences
contain information on structural and functional constraints and their evolutionary histories …

Comparative genomics reveals the diversification of triterpenoid biosynthesis and origin of ocotillol-type triterpenes in Panax

Z Yang, X Li, L Yang, S Peng, W Song, Y Lin… - Plant …, 2023 - cell.com
Gene duplication is assumed to be the major force driving the evolution of metabolite
biosynthesis in plants. Freed from functional burdens, duplicated genes can mutate toward …

A conserved mechanism affecting hydride shifting and deprotonation in the synthesis of hopane triterpenes as compositions of wax in oat

M Liang, F Zhang, J Xu, X Wang… - Proceedings of the …, 2022 - National Acad Sciences
Triterpenoids are biologically active metabolites synthesized from a common linear
precursor catalyzed by 2, 3-oxidosqualene cyclases (OSCs) to form diverse triterpenoid …

Multi‐omics data‐driven investigations of metabolic diversity of plant triterpenoids

Y Shang, S Huang - The Plant Journal, 2019 - Wiley Online Library
The vast majority of structurally diverse metabolites play essential roles in mediating the
interactions between plant and environment, and constitute a valuable resource for …

A structural and data-driven approach to engineering a plant cytochrome P450 enzyme

D Li, Y Ma, Y Zhou, J Gou, Y Zhong, L Zhao… - Science China Life …, 2019 - Springer
Functional manipulation of biosynthetic enzymes such as cytochrome P450s (or P450s) has
attracted great interest in metabolic engineering of plant natural products. Cucurbitacins and …

Deep learning-based characterization and redesign of major potato tuber storage protein

X Luo, L Cao, L Yu, M Gao, J Ai, D Gao, X Zhang… - Food Chemistry, 2024 - Elsevier
Potato is one of the most important crops worldwide, to feed a fast-growing population. In
addition to providing energy, fiber, vitamins, and minerals, potato storage proteins are …

Enhanced chemoselectivity of a plant cytochrome P450 through protein engineering of surface and catalytic residues

X Zhang, W Luo, Y Yao, X Luo, C Han, Y Zhong… - Abiotech, 2021 - Springer
Cytochrome P450s (P450s) are the most versatile catalysts utilized by plants to produce
structurally and functionally diverse metabolites. Given the high degree of gene redundancy …

Disentanglement of Evolutionary Constraints in Statistical Models of Proteins

H Wang, S Feng, K Tsuboyama, S Liu, GJ Rocklin… - PRX Life, 2024 - APS
The exponential growth of protein sequences in the post-genomic era has revolutionized the
application of generative sequence models for pivotal tasks such as contact prediction …