Toposeg: Topology-aware nuclear instance segmentation
Nuclear instance segmentation has been critical for pathology image analysis in medical
science, eg, cancer diagnosis. Current methods typically adopt pixel-wise optimization for …
science, eg, cancer diagnosis. Current methods typically adopt pixel-wise optimization for …
Topology-aware uncertainty for image segmentation
Segmentation of curvilinear structures such as vasculature and road networks is challenging
due to relatively weak signals and complex geometry/topology. To facilitate and accelerate …
due to relatively weak signals and complex geometry/topology. To facilitate and accelerate …
Calibrating uncertainty for semi-supervised crowd counting
Semi-supervised crowd counting is an important yet challenging task. A popular approach is
to iteratively generate pseudo-labels for unlabeled data and add them to the training set …
to iteratively generate pseudo-labels for unlabeled data and add them to the training set …
Semi-supervised segmentation of histopathology images with noise-aware topological consistency
In digital pathology, segmenting densely distributed objects like glands and nuclei is crucial
for downstream analysis. Since detailed pixel-wise annotations are very time-consuming, we …
for downstream analysis. Since detailed pixel-wise annotations are very time-consuming, we …
Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation
Accurately segmenting tubular structures, such as blood vessels or nerves, holds significant
clinical implications across various medical applications. However, existing methods often …
clinical implications across various medical applications. However, existing methods often …
TopoSemiSeg: Enforcing Topological Consistency for Semi-Supervised Segmentation of Histopathology Images
In computational pathology, segmenting densely distributed objects like glands and nuclei is
crucial for downstream analysis. To alleviate the burden of obtaining pixel-wise annotations …
crucial for downstream analysis. To alleviate the burden of obtaining pixel-wise annotations …
TopoCellGen: Generating Histopathology Cell Topology with a Diffusion Model
Accurately modeling multi-class cell topology is crucial in digital pathology, as it provides
critical insights into tissue structure and pathology. The synthetic generation of cell topology …
critical insights into tissue structure and pathology. The synthetic generation of cell topology …
Scale-Free Image Keypoints Using Differentiable Persistent Homology
In computer vision, keypoint detection is a fundamental task, with applications spanning from
robotics to image retrieval; however, existing learning-based methods suffer from scale …
robotics to image retrieval; however, existing learning-based methods suffer from scale …
Neurovascular Segmentation in sOCT with Deep Learning and Synthetic Training Data
Microvascular anatomy is known to be involved in various neurological disorders. However,
understanding these disorders is hindered by the lack of imaging modalities capable of …
understanding these disorders is hindered by the lack of imaging modalities capable of …
High-throughput analysis of dendrite and axonal arbors reveals transcriptomic correlates of neuroanatomy
Neuronal anatomy is central to the organization and function of brain cell types. However,
anatomical variability within apparently homogeneous populations of cells can obscure such …
anatomical variability within apparently homogeneous populations of cells can obscure such …