Mixed effects: a unifying framework for statistical modelling in fisheries biology
JT Thorson, C Minto - ICES Journal of Marine Science, 2015 - academic.oup.com
Fisheries biology encompasses a tremendous diversity of research questions, methods, and
models. Many sub-fields use observational or experimental data to make inference about …
models. Many sub-fields use observational or experimental data to make inference about …
sdmTMB: an R package for fast, flexible, and user-friendly generalized linear mixed effects models with spatial and spatiotemporal random fields
Geostatistical data—spatially referenced observations related to some continuous spatial
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …
Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments
JT Thorson - Fisheries Research, 2019 - Elsevier
Fisheries scientists provide stock, ecosystem, habitat, and climate assessments to support
interdisplinary fisheries management in the US and worldwide. These assessment activities …
interdisplinary fisheries management in the US and worldwide. These assessment activities …
Defining spatial structure for fishery stock assessment
SX Cadrin - Fisheries Research, 2020 - Elsevier
In principle, the spatial extent of fishery stock assessment should reflect the biological
population, and major fishing patterns or population heterogeneity within the area should be …
population, and major fishing patterns or population heterogeneity within the area should be …
Geostatistical delta-generalized linear mixed models improve precision for estimated abundance indices for West Coast groundfishes
Indices of abundance are the bedrock for stock assessments or empirical management
procedures used to manage fishery catches for fish populations worldwide, and are …
procedures used to manage fishery catches for fish populations worldwide, and are …
Comparing estimates of abundance trends and distribution shifts using single-and multispecies models of fishes and biogenic habitat
JT Thorson, LAK Barnett - ICES Journal of Marine Science, 2017 - academic.oup.com
Several approaches have been developed over the last decade to simultaneously estimate
distribution or density for multiple species (eg “joint species distribution” or “multispecies …
distribution or density for multiple species (eg “joint species distribution” or “multispecies …
Addressing uncertainty when projecting marine species' distributions under climate change
SC Davies, PL Thompson, C Gomez, J Nephin… - …, 2023 - Wiley Online Library
Species distribution models (SDMs) have been widely used to project terrestrial species'
responses to climate change and are increasingly being used for similar objectives in the …
responses to climate change and are increasingly being used for similar objectives in the …
Catch per unit effort modelling for stock assessment: A summary of good practices
SD Hoyle, RA Campbell, ND Ducharme-Barth… - Fisheries …, 2024 - Elsevier
Indices of abundance based on fishery catch-per-unit-effort (CPUE) are important
components of many stock assessments, particularly when fishery-independent surveys are …
components of many stock assessments, particularly when fishery-independent surveys are …
Joint dynamic species distribution models: a tool for community ordination and spatio‐temporal monitoring
Aim Spatial analysis of the distribution and density of species is of continuing interest within
theoretical and applied ecology. Species distribution models (SDMs) are being increasingly …
theoretical and applied ecology. Species distribution models (SDMs) are being increasingly …
Return of large fin whale feeding aggregations to historical whaling grounds in the Southern Ocean
H Herr, S Viquerat, F Devas, A Lees, L Wells… - Scientific reports, 2022 - nature.com
Fin whales (Balaenoptera physalus quoyi) of the Southern Hemisphere were brought to
near extinction by twentieth century industrial whaling. For decades, they had all but …
near extinction by twentieth century industrial whaling. For decades, they had all but …