Regulation of amino acid metabolic enzymes and transporters in plants

R Pratelli, G Pilot - Journal of experimental botany, 2014 - academic.oup.com
Amino acids play several critical roles in plants, from providing the building blocks of
proteins to being essential metabolites interacting with many branches of metabolism. They …

The regulation of essential amino acid synthesis and accumulation in plants

G Galili, R Amir, AR Fernie - Annual review of plant biology, 2016 - annualreviews.org
Although amino acids are critical for all forms of life, only proteogenic amino acids that
humans and animals cannot synthesize de novo and therefore must acquire in their diets …

[图书][B] Mathematical modeling in systems biology: an introduction

BP Ingalls - 2013 - books.google.com
An introduction to the mathematical concepts and techniques needed for the construction
and analysis of models in molecular systems biology. Systems techniques are integral to …

Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress

V Joshi, JG Joung, Z Fei, G Jander - Amino acids, 2010 - Springer
Pathways regulating threonine, methionine and isoleucine metabolism are very efficiently
interconnected in plants. As both threonine and methionine serve as substrates for …

From genetics to functional genomics: improvement in drought signaling and tolerance in wheat

H Budak, B Hussain, Z Khan, NZ Ozturk… - Frontiers in plant …, 2015 - frontiersin.org
Drought being a yield limiting factor has become a major threat to international food security.
It is a complex trait and drought tolerance response is carried out by various genes …

Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo

H Link, K Kochanowski, U Sauer - Nature biotechnology, 2013 - nature.com
Recent data suggest that the majority of proteins bind specific metabolites, and that such
interactions are relevant to metabolic and gene regulation,,. However, there are no methods …

Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks

PA Saa, LK Nielsen - Biotechnology advances, 2017 - Elsevier
Kinetic models are critical to predict the dynamic behaviour of metabolic networks.
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …

Metabolomic approaches toward understanding nitrogen metabolism in plants

M Kusano, A Fukushima, H Redestig… - Journal of Experimental …, 2011 - academic.oup.com
Plants can assimilate inorganic nitrogen (N) sources to organic N such as amino acids. N is
the most important of the mineral nutrients required by plants and its metabolism is tightly …

Synthetic RNA devices to expedite the evolution of metabolite-producing microbes

J Yang, SW Seo, S Jang, SI Shin, CH Lim… - Nature …, 2013 - nature.com
An extension of directed evolution strategies to genome-wide variations increases the
chance of obtaining metabolite-overproducing microbes. However, a general high …

Constructing the metabolic and regulatory pathways in germinating rice seeds through proteomic approach

D He, C Han, J Yao, S Shen, P Yang - Proteomics, 2011 - Wiley Online Library
Construction of metabolic and regulatory pathways from proteomic data can contextualize
the large‐scale data within the overall physiological scheme of an organism. It is an efficient …