RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
RNA-directed DNA methylation (RdDM) is the major small RNA-mediated epigenetic
pathway in plants. RdDM requires a specialized transcriptional machinery that comprises …
pathway in plants. RdDM requires a specialized transcriptional machinery that comprises …
Classification and comparison of small RNAs from plants
MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …
components of endogenous plant transcriptomes, as well as common responses to …
The Norway spruce genome sequence and conifer genome evolution
Conifers have dominated forests for more than 200 million years and are of huge ecological
and economic importance. Here we present the draft assembly of the 20-gigabase genome …
and economic importance. Here we present the draft assembly of the 20-gigabase genome …
DNA methylation mediated by a microRNA pathway
L Wu, H Zhou, Q Zhang, J Zhang, F Ni, C Liu, Y Qi - Molecular cell, 2010 - cell.com
In plants, the known microRNAs (miRNAs) are produced as∼ 21 nucleotide (nt) duplexes
from their precursors by Dicer-like 1 (DCL1). They are incorporated into Argonaute 1 (AGO1) …
from their precursors by Dicer-like 1 (DCL1). They are incorporated into Argonaute 1 (AGO1) …
Noncoding RNA in development
PP Amaral, JS Mattick - Mammalian genome, 2008 - Springer
Non-protein-coding sequences increasingly dominate the genomes of multicellular
organisms as their complexity increases, in contrast to protein-coding genes, which remain …
organisms as their complexity increases, in contrast to protein-coding genes, which remain …
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
Small RNAs have a variety of important roles in plant development, stress responses, and
other processes. They exert their influence by guiding mRNA cleavage, translational …
other processes. They exert their influence by guiding mRNA cleavage, translational …
Site‐specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts
J Pfalz, OA Bayraktar, J Prikryl, A Barkan - The EMBO journal, 2009 - embopress.org
Chloroplast mRNA populations are characterized by overlapping transcripts derived by
processing from polycistronic precursors. The mechanisms and functional significance of …
processing from polycistronic precursors. The mechanisms and functional significance of …
PMRD: plant microRNA database
MicroRNAs (miRNA) are∼ 21 nucleotide-long non-coding small RNAs, which function as
post-transcriptional regulators in eukaryotes. miRNAs play essential roles in regulating plant …
post-transcriptional regulators in eukaryotes. miRNAs play essential roles in regulating plant …
Identification of grapevine microRNAs and their targets using high‐throughput sequencing and degradome analysis
In plants, microRNAs (miRNAs) comprise one of three classes of small RNAs regulating
gene expression at the post‐transcriptional level. Many plant miRNAs are conserved, and …
gene expression at the post‐transcriptional level. Many plant miRNAs are conserved, and …
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
In plants there are several classes of 21–24-nt short RNAs that regulate gene expression.
The most conserved class is the microRNAs (miRNAs), although some miRNAs are found …
The most conserved class is the microRNAs (miRNAs), although some miRNAs are found …