[HTML][HTML] Training set optimization for sparse phenotyping in genomic selection: A conceptual overview

J Isidro y Sánchez, D Akdemir - Frontiers in Plant Science, 2021 - frontiersin.org
Genomic selection (GS) is becoming an essential tool in breeding programs due to its role in
increasing genetic gain per unit time. The design of the training set (TRS) in GS is one of the …

Diversifying maize genomic selection models

BR Rice, AE Lipka - Molecular Breeding, 2021 - Springer
Genomic selection (GS) is one of the most powerful tools available for maize breeding. Its
use of genome-wide marker data to estimate breeding values translates to increased …

[HTML][HTML] A comparison of methods for training population optimization in genomic selection

J Fernández-González, D Akdemir… - Theoretical and Applied …, 2023 - Springer
Abstract Key message Maximizing CDmean and Avg_GRM_self were the best criteria for
training set optimization. A training set size of 50–55%(targeted) or 65–85%(untargeted) is …

Accelerating genetic gains for quantitative resistance to Verticillium wilt through predictive breeding in strawberry

MJ Feldmann, DDA Pincot, MV Vachev… - The Plant …, 2024 - Wiley Online Library
Verticillium wilt (VW), a devastating vascular wilt disease of strawberry (Fragaria× *
ananassa), has caused economic losses for nearly a century. This disease is caused by the …

[HTML][HTML] A genome-wide association study and genomic prediction for Phakopsora pachyrhizi resistance in soybean

H Xiong, Y Chen, YB Pan, J Wang, W Lu… - Frontiers in Plant …, 2023 - frontiersin.org
Soybean brown rust (SBR), caused by Phakopsora pachyrhizi, is a devastating fungal
disease that threatens global soybean production. This study conducted a genome-wide …

[HTML][HTML] Trainsel: an r package for selection of training populations

D Akdemir, S Rio, J Isidro y Sánchez - Frontiers in genetics, 2021 - frontiersin.org
A major barrier to the wider use of supervised learning in emerging applications, such as
genomic selection, is the lack of sufficient and representative labeled data to train prediction …

[HTML][HTML] Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values

SH Brainard, SL Ellison, PW Simon, JC Dawson… - Theoretical and Applied …, 2022 - Springer
Key message The principal phenotypic determinants of market class in carrot—the size and
shape of the root—are under primarily additive, but also highly polygenic, genetic control …

Genomic prediction and training set optimization in a structured Mediterranean oat population

S Rio, L Gallego-Sánchez, G Montilla-Bascón… - Theoretical and Applied …, 2021 - Springer
Key message The strong genetic structure observed in Mediterranean oats affects the
predictive ability of genomic prediction as well as the performance of training set …

Experimental evaluation of genomic selection prediction for rust resistance in sugarcane

MS Islam, PH McCord, MO Olatoye, L Qin… - The Plant …, 2021 - Wiley Online Library
The total sugarcane (Saccharum L.) production has increased worldwide; however, the rate
of growth is lower compared with other major crops, mainly due to a plateauing of genetic …

Designing optimal training sets for genomic prediction using adversarial validation with probit regression

OA Montesinos‐López, Kismiantini… - Plant …, 2023 - Wiley Online Library
Genomic selection (GS) is a disruptive methodology that is revolutionizing animal and plant
breeding. However, its practical implementation is challenging since many times there is a …