Quantitative metabolic fluxes regulated by trans-omic networks

S Ohno, S Uematsu, S Kuroda - Biochemical Journal, 2022 - portlandpress.com
Cells change their metabolism in response to internal and external conditions by regulating
the trans-omic network, which is a global biochemical network with multiple omic layers …

Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle

R Egami, T Kokaji, A Hatano, K Yugi, M Eto, K Morita… - IScience, 2021 - cell.com
Systemic metabolic homeostasis is regulated by inter-organ metabolic cycles involving
multiple organs. Obesity impairs inter-organ metabolic cycles, resulting in metabolic …

[HTML][HTML] Pioneering noninvasive colorectal cancer detection with an AI-enhanced breath volatilomics platform

Y Liu, Y Ji, J Chen, Y Zhang, X Li, X Li - Theranostics, 2024 - ncbi.nlm.nih.gov
Background: The sensitivity and specificity of current breath biomarkers are often
inadequate for effective cancer screening, particularly in colorectal cancer (CRC). While a …

In situ digestion of alcohol-fixed cells for quantitative proteomics

A Hatano, T Takami, M Matsumoto - The Journal of Biochemistry, 2023 - academic.oup.com
Currently, the bottom-up approach, in which proteins are digested by enzymes such as
trypsin prior to mass spectrometry, is the mainstream approach in mass spectrometer-based …

Time and dose selective glucose metabolism for glucose homeostasis and energy conversion in the liver

Y Pan, A Hatano, S Ohno, K Morita, T Kokaji… - npj Systems Biology …, 2024 - nature.com
Hepatic glucose metabolism serves dual purposes: maintaining glucose homeostasis and
converting glucose into energy sources; however, the underlying mechanisms are unclear …

DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle

H Maehara, T Kokaji, A Hatano, Y Suzuki… - Scientific reports, 2023 - nature.com
Each tissue has a dominant set of functional proteins required to mediate tissue-specific
functions. Epigenetic modifications, transcription, and translational efficiency control tissue …

Comparison of the Effect of Phospholipid Extracts from Salmon and Silver Carp Heads on High-Fat-Diet-Induced Metabolic Syndrome in C57BL/6J Mice

Q Wang, R Wang, X Zhao, H Lu, P Zhang, X Dong… - Marine Drugs, 2023 - mdpi.com
Metabolic syndrome (MetS) is a global health problem, and EPA/DHA-enriched
phospholipids (EPA/DHA-PLs) have been found to have positive effects on MetS …

[HTML][HTML] Multi-omics-based label-free metabolic flux inference reveals obesity-associated dysregulatory mechanisms in liver glucose metabolism

S Uematsu, S Ohno, KY Tanaka, A Hatano, T Kokaji… - Iscience, 2022 - cell.com
Glucose homeostasis is maintained by modulation of metabolic flux. Enzymes and
metabolites regulate the involved metabolic pathways. Dysregulation of glucose …

An extensive and dynamic trans-omic network illustrating prominent regulatory mechanisms in response to insulin in the liver

F Matsuzaki, S Uda, Y Yamauchi, M Matsumoto… - Cell Reports, 2021 - cell.com
An effective combination of multi-omic datasets can enhance our understanding of complex
biological phenomena. To build a context-dependent network with multiple omic layers, ie, a …

Metabolomic and transcriptomic profiling of adult mice and larval zebrafish leptin mutants reveal a common pattern of changes in metabolites and signaling pathways

Y Ding, MC Haks, G Forn-Cuní, J He, N Nowik… - Cell & Bioscience, 2021 - Springer
Background Leptin plays a critical role in the regulation of metabolic homeostasis. However,
the molecular mechanism and cross talks between leptin and metabolic pathways leading to …