[HTML][HTML] The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

TeraChem: A graphical processing unit‐accelerated electronic structure package for large‐scale ab initio molecular dynamics

S Seritan, C Bannwarth, BS Fales… - Wiley …, 2021 - Wiley Online Library
TeraChem was born in 2008 with the goal of providing fast on‐the‐fly electronic structure
calculations to facilitate ab initio molecular dynamics studies of large biochemical systems …

The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry

G Li Manni, I Fdez. Galván, A Alavi… - Journal of chemical …, 2023 - ACS Publications
The developments of the open-source OpenMolcas chemistry software environment since
spring 2020 are described, with a focus on novel functionalities accessible in the stable …

Electronic structure methods for the description of nonadiabatic effects and conical intersections

S Matsika - Chemical Reviews, 2021 - ACS Publications
Nonadiabatic effects are ubiquitous in photophysics and photochemistry, and therefore,
many theoretical developments have been made to properly describe them. Conical …

[HTML][HTML] TeraChem: Accelerating electronic structure and ab initio molecular dynamics with graphical processing units

S Seritan, C Bannwarth, BS Fales… - The Journal of …, 2020 - pubs.aip.org
Developed over the past decade, TeraChem is an electronic structure and ab initio
molecular dynamics software package designed from the ground up to leverage graphics …

[HTML][HTML] Towards the engineering of a photon-only two-stroke rotary molecular motor

M Filatov, M Paolino, R Pierron, A Cappelli… - nature …, 2022 - nature.com
The rational engineering of photoresponsive materials, eg, light-driven molecular motors, is
a challenging task. Here, we use structure-related design rules to prepare a prototype …

[HTML][HTML] Resolving the ultrafast dynamics of the anionic green fluorescent protein chromophore in water

CM Jones, NH List, TJ Martínez - Chemical Science, 2021 - pubs.rsc.org
The chromophore of the green fluorescent protein (GFP) is critical for probing environmental
influences on fluorescent protein behavior. Using the aqueous system as a bridge between …

Variational density functional calculations of excited states: Conical intersection and avoided crossing in ethylene bond twisting

YLA Schmerwitz, AV Ivanov, EO Jónsson… - The Journal of …, 2022 - ACS Publications
Theoretical studies of photochemical processes require a description of the energy surfaces
of excited electronic states, especially near degeneracies, where transitions between states …

Steric and Electronic Origins of Fluorescence in GFP and GFP-like Proteins

CM Jones, NH List, TJ Martínez - Journal of the American …, 2022 - ACS Publications
Fluorescent proteins have become routine tools for biological imaging. However, their
nanosecond lifetimes on the excited state present computational hurdles to a full …

Assessment of the Electron Correlation Treatment on the Quantum-Classical Dynamics of Retinal Protonated Schiff Base Models: XMS-CASPT2, RMS-CASPT2, and …

L Barneschi, D Kaliakin, M Huix-Rotllant… - Journal of Chemical …, 2023 - ACS Publications
We compare the performance of three different multiconfigurational wave function-based
electronic structure methods and two implementations of the spin-restricted ensemble …