Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

EJ Carpenter, N Matasci, S Ayyampalayam, S Wu… - …, 2019 - academic.oup.com
Abstract Background The 1000 Plant transcriptomes initiative (1KP) explored genetic
diversity by sequencing RNA from 1,342 samples representing 1,173 species of green …

Sequencing and analyzing the transcriptomes of a thousand species across the tree of life for green plants

GKS Wong, DE Soltis, J Leebens-Mack… - Annual Review of …, 2020 - annualreviews.org
The 1,000 Plants (1KP) initiative was the first large-scale effort to collect next-generation
sequencing (NGS) data across a phylogenetically representative sampling of species for a …

A novel family of secreted insect proteins linked to plant gall development

A Korgaonkar, C Han, AL Lemire, I Siwanowicz… - Current Biology, 2021 - cell.com
In an elaborate form of inter-species exploitation, many insects hijack plant development to
induce novel plant organs called galls that provide the insect with a source of nutrition and a …

Diverse Sorghum bicolor accessions show marked variation in growth and transcriptional responses to arbuscular mycorrhizal fungi

SJ Watts‐Williams, BD Emmett… - Plant, Cell & …, 2019 - Wiley Online Library
Sorghum is an important crop grown worldwide for feed and fibre. Like most plants, it has the
capacity to benefit from symbioses with arbuscular mycorrhizal (AM) fungi, and its diverse …

Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining

R Hellinger, J Koehbach, DE Soltis… - Journal of proteome …, 2015 - ACS Publications
Cyclotides are plant-derived mini proteins. They are genetically encoded as precursor
proteins that become post-translationally modified to yield circular cystine-knotted …

Genome of the ramshorn snail Biomphalaria straminea—an obligate intermediate host of schistosomiasis

W Nong, Y Yu, ME Aase-Remedios, Y Xie, WL So… - …, 2022 - academic.oup.com
Background Schistosomiasis, or bilharzia, is a parasitic disease caused by trematode
flatworms of the genus Schistosoma. Infection by Schistosoma mansoni in humans results …

Genome-wide analysis of autophagy-related gene family and PagATG18a enhances salt tolerance by regulating ROS homeostasis in poplar

XQ Yu, W Su, H Zhang, M Niu, X Liu, Z Li, C Liu… - International Journal of …, 2023 - Elsevier
Autophagy is the process by which intracellular components are delivered to lysosomes or
vacuoles for degradation and recycling, which can promote the tolerance of organisms to …

Biofilm Formation and Synthesis of Antimicrobial Compounds by the Biocontrol Agent Bacillus velezensis QST713 in an Agaricus bisporus Compost Micromodel

C Pandin, M Darsonval, C Mayeur… - Applied and …, 2019 - Am Soc Microbiol
Bacillus velezensis QST713 is widely used as a biological control agent for crop protection
and disease suppression. This strain is used industrially in France for the protection of …