The Digital Brain Bank, an open access platform for post-mortem imaging datasets
BC Tendler, T Hanayik, O Ansorge… - Elife, 2022 - elifesciences.org
Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-
resolution datasets to investigate neuroanatomy and validate the origins of image contrast …
resolution datasets to investigate neuroanatomy and validate the origins of image contrast …
[HTML][HTML] Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data
IN Huszar, M Pallebage-Gamarallage… - Neuroimage, 2023 - Elsevier
Background Accurate registration between microscopy and MRI data is necessary for
validating imaging biomarkers against neuropathology, and to disentangle complex signal …
validating imaging biomarkers against neuropathology, and to disentangle complex signal …
Modeling an equivalent b‐value in diffusion‐weighted steady‐state free precession
Purpose Diffusion‐weighted steady‐state free precession (DW‐SSFP) is shown to provide a
means to probe non‐Gaussian diffusion through manipulation of the flip angle. A framework …
means to probe non‐Gaussian diffusion through manipulation of the flip angle. A framework …
[PDF][PDF] An automated pipeline for extracting quantitative histological metrics for voxelwise MRI-histology comparisons
The acquisition of MRI and histology in the same post-mortem tissue sample enables direct
correlation between MRI and histologically-derived parameters. However, there still lacks a …
correlation between MRI and histologically-derived parameters. However, there still lacks a …
A method to remove the influence of fixative concentration on postmortem T2 maps using a kinetic tensor model
BC Tendler, F Qi, S Foxley… - Human Brain …, 2021 - Wiley Online Library
Formalin fixation has been shown to substantially reduce T2 estimates, primarily driven by
the presence of fixative in tissue. Prior to scanning, post‐mortem samples are often placed …
the presence of fixative in tissue. Prior to scanning, post‐mortem samples are often placed …
[HTML][HTML] An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
The acquisition of MRI and histology in the same post-mortem tissue sample enables direct
correlation between MRI and histologically-derived parameters. However, there still lacks a …
correlation between MRI and histologically-derived parameters. However, there still lacks a …
Investigating tissue microstructure using steady-state diffusion MRI
BC Tendler - bioRxiv, 2024 - biorxiv.org
Diffusion MRI is a leading method to non-invasively characterise brain tissue microstructure
across multiple domains and scales. Diffusion-weighted steady-state free precession (DW …
across multiple domains and scales. Diffusion-weighted steady-state free precession (DW …
Tensor Image Registration Library: Automated Deformable Registration of Stand-Alone Histology Images to Whole-Brain Post-Mortem MRI Data
IN Huszar, M Pallebage-Gamarallage… - bioRxiv, 2022 - biorxiv.org
Background Accurate registration between microscopy and MRI data is necessary for
validating imaging biomarkers against neuropathology, and to disentangle complex signal …
validating imaging biomarkers against neuropathology, and to disentangle complex signal …