Consistent development of bioprocesses from microliter cultures to the industrial scale

P Neubauer, N Cruz, F Glauche… - Engineering in Life …, 2013 - Wiley Online Library
Bioprocess development today is slow and expensive compared to chemical process
development. A drastic paradigm shift is necessary and possible by the consistent …

[HTML][HTML] Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics

K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …

Enzyme kinetics for systems biology: when, why and how

M Adamczyk, K van Eunen, BM Bakker… - Methods in …, 2011 - Elsevier
In vitro enzymatic assays of cell-free extracts offer an opportunity to assess in vivo enzyme
concentrations. If performed under conditions that resemble the conditions in vivo, they may …

Macroscopic modelling of baker's yeast production in fed-batch cultures and its link with trehalose production

A Richelle, P Fickers, P Bogaerts - Computers & chemical engineering, 2014 - Elsevier
A macroscopic model describing the influence of nitrogen on a fed-batch baker's yeast
production process is proposed. First, on the basis of a set of biological reactions, inspired …

[HTML][HTML] Glycolysis is governed by growth regime and simple enzyme regulation in adherent MDCK cells

M Rehberg, JB Ritter, U Reichl - PLoS computational biology, 2014 - journals.plos.org
Due to its vital importance in the supply of cellular pathways with energy and precursors,
glycolysis has been studied for several decades regarding its capacity and regulation. For a …

Isoenzyme expression changes in response to high temperature determine the metabolic regulation of increased glycolytic flux in yeast

J Postmus, R Aardema, LJ de Koning… - FEMS yeast …, 2012 - academic.oup.com
Qualitative phenotypic changes are the integrated result of quantitative changes at multiple
regulatory levels. To explain the temperature-induced increase of glycolytic flux in …

[HTML][HTML] A new regulatory principle for in vivo biochemistry: Pleiotropic low affinity regulation by the adenine nucleotides–Illustrated for the glycolytic enzymes of …

FIC Mensonides, BM Bakker, F Cremazy, HL Messiha… - FEBS letters, 2013 - Elsevier
Enzymology tends to focus on highly specific effects of substrates, allosteric modifiers, and
products occurring at low concentrations, because these are most informative about the …

Quantitative analysis of flux regulation through hierarchical regulation analysis

K van Eunen, S Rossell, J Bouwman… - Methods in …, 2011 - Elsevier
Regulation analysis is a methodology that quantifies to what extent a change in the flux
through a metabolic pathway is regulated by either gene expression or metabolism. Two …

Multiphasic adaptation of the transcriptome of Saccharomyces cerevisiae to heat stress

FIC Mensonides, KJ Hellingwerf, MJT de Mattos… - Food research …, 2013 - Elsevier
The genome-wide transcriptional response of Saccharomyces cerevisiae to a temperature
shift from 28° C to 41° C–a temperature at which cell viability was not impaired, but growth …

Metabolic flux and nodes control analysis of brewer's yeasts under different fermentation temperature during beer brewing

Z Yu, H Zhao, M Zhao, H Lei, H Li - Applied biochemistry and …, 2012 - Springer
The aim of this work was to further investigate the glycolysis performance of lager and ale
brewer's yeasts under different fermentation temperature using a combined analysis of …