Consistent development of bioprocesses from microliter cultures to the industrial scale
Bioprocess development today is slow and expensive compared to chemical process
development. A drastic paradigm shift is necessary and possible by the consistent …
development. A drastic paradigm shift is necessary and possible by the consistent …
[HTML][HTML] Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics
K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …
showed that one of the most studied biochemical pathways could not be quite understood in …
Enzyme kinetics for systems biology: when, why and how
M Adamczyk, K van Eunen, BM Bakker… - Methods in …, 2011 - Elsevier
In vitro enzymatic assays of cell-free extracts offer an opportunity to assess in vivo enzyme
concentrations. If performed under conditions that resemble the conditions in vivo, they may …
concentrations. If performed under conditions that resemble the conditions in vivo, they may …
Macroscopic modelling of baker's yeast production in fed-batch cultures and its link with trehalose production
A macroscopic model describing the influence of nitrogen on a fed-batch baker's yeast
production process is proposed. First, on the basis of a set of biological reactions, inspired …
production process is proposed. First, on the basis of a set of biological reactions, inspired …
[HTML][HTML] Glycolysis is governed by growth regime and simple enzyme regulation in adherent MDCK cells
Due to its vital importance in the supply of cellular pathways with energy and precursors,
glycolysis has been studied for several decades regarding its capacity and regulation. For a …
glycolysis has been studied for several decades regarding its capacity and regulation. For a …
Isoenzyme expression changes in response to high temperature determine the metabolic regulation of increased glycolytic flux in yeast
J Postmus, R Aardema, LJ de Koning… - FEMS yeast …, 2012 - academic.oup.com
Qualitative phenotypic changes are the integrated result of quantitative changes at multiple
regulatory levels. To explain the temperature-induced increase of glycolytic flux in …
regulatory levels. To explain the temperature-induced increase of glycolytic flux in …
[HTML][HTML] A new regulatory principle for in vivo biochemistry: Pleiotropic low affinity regulation by the adenine nucleotides–Illustrated for the glycolytic enzymes of …
FIC Mensonides, BM Bakker, F Cremazy, HL Messiha… - FEBS letters, 2013 - Elsevier
Enzymology tends to focus on highly specific effects of substrates, allosteric modifiers, and
products occurring at low concentrations, because these are most informative about the …
products occurring at low concentrations, because these are most informative about the …
Quantitative analysis of flux regulation through hierarchical regulation analysis
Regulation analysis is a methodology that quantifies to what extent a change in the flux
through a metabolic pathway is regulated by either gene expression or metabolism. Two …
through a metabolic pathway is regulated by either gene expression or metabolism. Two …
Multiphasic adaptation of the transcriptome of Saccharomyces cerevisiae to heat stress
FIC Mensonides, KJ Hellingwerf, MJT de Mattos… - Food research …, 2013 - Elsevier
The genome-wide transcriptional response of Saccharomyces cerevisiae to a temperature
shift from 28° C to 41° C–a temperature at which cell viability was not impaired, but growth …
shift from 28° C to 41° C–a temperature at which cell viability was not impaired, but growth …
Metabolic flux and nodes control analysis of brewer's yeasts under different fermentation temperature during beer brewing
Z Yu, H Zhao, M Zhao, H Lei, H Li - Applied biochemistry and …, 2012 - Springer
The aim of this work was to further investigate the glycolysis performance of lager and ale
brewer's yeasts under different fermentation temperature using a combined analysis of …
brewer's yeasts under different fermentation temperature using a combined analysis of …