Glycosaminoglycans: what remains to be deciphered?

S Perez, O Makshakova, J Angulo, E Bedini, A Bisio… - Jacs Au, 2023 - ACS Publications
Glycosaminoglycans (GAGs) are complex polysaccharides exhibiting a vast structural
diversity and fulfilling various functions mediated by thousands of interactions in the …

Big-data glycomics: tools to connect glycan biosynthesis to extracellular communication

BP Kellman, NE Lewis - Trends in biochemical sciences, 2021 - cell.com
Characteristically, cells must sense and respond to environmental cues. Despite the
importance of cell–cell communication, our understanding remains limited and often lacks …

Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts

PV Toukach, KS Egorova - Nucleic acids research, 2016 - academic.oup.com
Abstract The Carbohydrate Structure Databases (CSDBs, http://csdb. glycoscience. ru) store
structural, bibliographic, taxonomic, NMR spectroscopic, and other data on natural …

GlycoStore: a database of retention properties for glycan analysis

S Zhao, I Walsh, JL Abrahams, L Royle… - …, 2018 - academic.oup.com
GlycoStore is a curated chromatographic, electrophoretic and mass-spectrometry
composition database of N-, O-, glycosphingolipid (GSL) glycans and free oligosaccharides …

GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics

WB Struwe, K Pagel, JLP Benesch, DJ Harvey… - Glycoconjugate …, 2016 - Springer
Ion mobility mass spectrometry (IM-MS) is a promising analytical technique for glycomics
that separates glycan ions based on their collision cross section (CCS) and provides glycan …

The glycoscience of immunity

JY Zhou, DM Oswald, KD Oliva, LSC Kreisman… - Trends in …, 2018 - cell.com
Carbohydrates, or glycans, are as integral to biology as nucleic acids and proteins. In
immunology, glycans are well known to drive diverse functions ranging from …

Glycomics@ ExPASy: bridging the gap

J Mariethoz, D Alocci, A Gastaldello… - Molecular & Cellular …, 2018 - ASBMB
Glycomics@ ExPASy (https://www. expasy. org/glycomics) is the glycomics tab of ExPASy,
the server of SIB Swiss Institute of Bioinformatics. It was created in 2016 to centralize web …

Composition of the Biofilm Matrix of Cutibacterium acnes Acneic Strain RT5

AV Gannesen, EL Zdorovenko, EA Botchkova… - Frontiers in …, 2019 - frontiersin.org
In skin, Cutibacterium acnes (former Propionibacterium acnes) can behave as an
opportunistic pathogen, depending on the strain and environmental conditions. Acneic …

Recent advances in mass spectrometry analysis of neuropeptides

A Phetsanthad, NQ Vu, Q Yu… - Mass spectrometry …, 2023 - Wiley Online Library
Due to their involvement in numerous biochemical pathways, neuropeptides have been the
focus of many recent research studies. Unfortunately, classic analytical methods, such as …

Property graph vs RDF triple store: A comparison on glycan substructure search

D Alocci, J Mariethoz, O Horlacher, JT Bolleman… - PloS one, 2015 - journals.plos.org
Resource description framework (RDF) and Property Graph databases are emerging
technologies that are used for storing graph-structured data. We compare these …