Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

P Picotti, R Aebersold - Nature methods, 2012 - nature.com
Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that is
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …

[HTML][HTML] Mass spectrometry based biomarker discovery, verification, and validation–quality assurance and control of protein biomarker assays

CE Parker, CH Borchers - Molecular oncology, 2014 - Elsevier
In its early years, mass spectrometry (MS)-based proteomics focused on the cataloging of
proteins found in different species or different tissues. By 2005, proteomics was being used …

Precision of heavy–light peptide ratios measured by MALDI-TOF mass spectrometry

NL Anderson, M Razavi, TW Pearson… - Journal of proteome …, 2012 - ACS Publications
We have investigated the precision of peptide quantitation by MALDI-TOF mass
spectrometry (MS) using six pairs of proteotypic peptides (light) and same-sequence stable …

A specific function for the histone chaperone NASP to fine-tune a reservoir of soluble H3-H4 in the histone supply chain

AJL Cook, ZA Gurard-Levin, I Vassias, G Almouzni - Molecular cell, 2011 - cell.com
Proper genome packaging requires coordination of both DNA and histone metabolism.
While histone gene transcription and RNA processing adequately provide for scheduled …

Prevention of amino acid conversion in SILAC experiments with embryonic stem cells

SC Bendall, C Hughes, MH Stewart, B Doble… - Molecular & Cellular …, 2008 - ASBMB
Recent studies using stable isotope labeling with amino acids in culture (SILAC) in
quantitative proteomics have made mention of the problematic conversion of isotope-coded …

Current affairs in quantitative targeted proteomics: multiple reaction monitoring–mass spectrometry

AK Yocum, AM Chinnaiyan - Briefings in Functional Genomics …, 2009 - academic.oup.com
Quantitative targeted proteomics has recently taken front stage in the proteomics community.
Centered on multiple reaction monitoring–mass spectrometry (MRM–MS) methodologies …

Proteome of human stem cells from periodontal ligament and dental pulp

E Eleuterio, O Trubiani, M Sulpizio, F Di Giuseppe… - PLoS …, 2013 - journals.plos.org
Background Many adult tissues contain a population of stem cells with the ability to
regenerate structures similar to the microenvironments from which they are derived in vivo …

Human embryonic mesodermal progenitors highly resemble human mesenchymal stem cells and display high potential for tissue engineering applications

GM De Peppo, S Svensson, M Lennerås… - … Engineering Part A, 2010 - liebertpub.com
Adult stem cells, such as human mesenchymal stem cells (hMSCs), show limited
proliferative capacity and, after long-term culture, lose their differentiation capacity and are …

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Quantitative Comparison of the Membrane Proteomes of Self-renewing and Differentiating Human …

TA Prokhorova, KTG Rigbolt, PT Johansen… - Molecular & Cellular …, 2009 - ASBMB
Stable isotope labeling by amino acids in cell culture (SILAC) is a powerful quantitative
proteomics platform for comprehensive characterization of complex biological systems …

Targeted proteomics by selected reaction monitoring mass spectrometry: applications to systems biology and biomarker discovery

S Elschenbroich, T Kislinger - Molecular bioSystems, 2011 - pubs.rsc.org
Mass Spectrometry-based proteomics is now considered a relatively established strategy for
protein analysis, ranging from global expression profiling to the identification of protein …