Application of combinatorial optimization strategies in synthetic biology

G Naseri, MAG Koffas - Nature communications, 2020 - nature.com
In the first wave of synthetic biology, genetic elements, combined into simple circuits, are
used to control individual cellular functions. In the second wave of synthetic biology, the …

Development and application of CRISPR/Cas in microbial biotechnology

W Ding, Y Zhang, S Shi - Frontiers in Bioengineering and …, 2020 - frontiersin.org
The clustered regularly interspaced short palindromic repeats (CRISPR)-associated (Cas)
system has been rapidly developed as versatile genomic engineering tools with high …

Optogenetics illuminates applications in microbial engineering

SM Hoffman, AY Tang, JL Avalos - Annual review of chemical …, 2022 - annualreviews.org
Optogenetics has been used in a variety of microbial engineering applications, such as
chemical and protein production, studies of cell physiology, and engineered microbe–host …

Optogenetic tools for microbial synthetic biology

N Chia, SY Lee, Y Tong - Biotechnology Advances, 2022 - Elsevier
Chemical induction is one of the most common modalities used to manipulate gene
expression in living systems. However, chemical induction can be toxic or expensive that …

Optogenetic strategies for the control of gene expression in yeasts

ALA Pérez, LC Piva, JPC Fulber, LMP de Moraes… - Biotechnology …, 2022 - Elsevier
Optogenetics involves the use of light to control cellular functions and has become
increasingly popular in various areas of research, especially in the precise control of gene …

Lustro: High-throughput optogenetic experiments enabled by automation and a yeast optogenetic toolkit

ZP Harmer, MN McClean - ACS Synthetic Biology, 2023 - ACS Publications
Optogenetic systems use genetically encoded light-sensitive proteins to control cellular
processes. This provides the potential to orthogonally control cells with light; however, these …

Near-infrared imaging in fission yeast using a genetically encoded phycocyanobilin biosynthesis system

K Sakai, Y Kondo, H Fujioka, M Kamiya… - Journal of Cell …, 2021 - journals.biologists.com
Near-infrared fluorescent protein (iRFP) is a bright and stable fluorescent protein with near-
infrared excitation and emission maxima. Unlike the other conventional fluorescent proteins …

Photoactivatable base editors for spatiotemporally controlled genome editing in vivo

Q Zou, Y Lu, B Qing, N Li, T Zhou, J Pan, X Zhang… - Biomaterials, 2023 - Elsevier
CRISPR-based base editors (BEs) are powerful tools for precise nucleotide substitution in a
wide range of organisms, but spatiotemporal control of base editing remains a daunting …

The rise and shine of yeast optogenetics

D Figueroa, V Rojas, A Romero, LF Larrondo… - Yeast, 2021 - Wiley Online Library
Optogenetics refers to the control of biological processes with light. The activation of cellular
phenomena by defined wavelengths has several advantages compared with traditional …

Lights up on organelles: Optogenetic tools to control subcellular structure and organization

TC Kichuk, C Carrasco‐López… - WIREs Mechanisms of …, 2021 - Wiley Online Library
Since the neurobiological inception of optogenetics, light‐controlled molecular perturbations
have been applied in many scientific disciplines to both manipulate and observe cellular …