Protein binding pocket dynamics
Conspectus The dynamics of protein binding pockets are crucial for their interaction
specificity. Structural flexibility allows proteins to adapt to their individual molecular binding …
specificity. Structural flexibility allows proteins to adapt to their individual molecular binding …
Ten things you should know about protein kinases: IUPHAR R eview 14
D Fabbro, SW Cowan‐Jacob… - British journal of …, 2015 - Wiley Online Library
Many human malignancies are associated with aberrant regulation of protein or lipid
kinases due to mutations, chromosomal rearrangements and/or gene amplification. Protein …
kinases due to mutations, chromosomal rearrangements and/or gene amplification. Protein …
DeepDTAF: a deep learning method to predict protein–ligand binding affinity
Biomolecular recognition between ligand and protein plays an essential role in drug
discovery and development. However, it is extremely time and resource consuming to …
discovery and development. However, it is extremely time and resource consuming to …
Mechanisms and functions of p38 MAPK signalling
A Cuadrado, AR Nebreda - Biochemical journal, 2010 - portlandpress.com
The p38 MAPK (mitogen-activated protein kinase) signalling pathway allows cells to
interpret a wide range of external signals and respond appropriately by generating a …
interpret a wide range of external signals and respond appropriately by generating a …
Molecular interaction studies using microscale thermophoresis
M Jerabek-Willemsen, CJ Wienken… - Assay and drug …, 2011 - liebertpub.com
The use of infrared laser sources for creation of localized temperature fields has opened
new possibilities for basic research and drug discovery. A recently developed technology …
new possibilities for basic research and drug discovery. A recently developed technology …
Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening
TA Halgren, RB Murphy, RA Friesner… - Journal of medicinal …, 2004 - ACS Publications
Glide's ability to identify active compounds in a database screen is characterized by
applying Glide to a diverse set of nine protein receptors. In many cases, two, or even three …
applying Glide to a diverse set of nine protein receptors. In many cases, two, or even three …
Protein conformational flexibility modulates kinetics and thermodynamics of drug binding
M Amaral, DB Kokh, J Bomke, A Wegener… - Nature …, 2017 - nature.com
Abstract Structure-based drug design has often been restricted by the rather static picture of
protein–ligand complexes presented by crystal structures, despite the widely accepted …
protein–ligand complexes presented by crystal structures, despite the widely accepted …
Mechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF
PTC Wan, MJ Garnett, SM Roe, S Lee… - Cell, 2004 - cell.com
Over 30 mutations of the B-RAF gene associated with human cancers have been identified,
the majority of which are located within the kinase domain. Here we show that of 22 B-RAF …
the majority of which are located within the kinase domain. Here we show that of 22 B-RAF …
Anti-hepatocellular carcinoma biomolecules: molecular targets insights
This report explores the available curative molecules directed against hepatocellular
carcinoma (HCC). Limited efficiency as well as other drawbacks of existing molecules led to …
carcinoma (HCC). Limited efficiency as well as other drawbacks of existing molecules led to …
The selectivity of protein kinase inhibitors: a further update
J Bain, L Plater, M Elliott, N Shpiro, CJ Hastie… - Biochemical …, 2007 - portlandpress.com
The specificities of 65 compounds reported to be relatively specific inhibitors of protein
kinases have been profiled against a panel of 70–80 protein kinases. On the basis of this …
kinases have been profiled against a panel of 70–80 protein kinases. On the basis of this …