Intrinsically disordered protein regions and phase separation: sequence determinants of assembly or lack thereof.

EW Martin, AS Holehouse - Emerging topics in life sciences, 2020 - europepmc.org
Intrinsically disordered protein regions (IDRs)-regions that do not fold into a fixed three-
dimensional structure but instead exist in a heterogeneous ensemble of conformations-have …

How do intrinsically disordered protein regions encode a driving force for liquid–liquid phase separation?

W Borcherds, A Bremer, MB Borgia, T Mittag - Current opinion in structural …, 2021 - Elsevier
Highlights•Not all IDRs undergo liquid–liquid phase separation.•IDRs are not necessary for
protein phase separation.•A stickers-and-spacers framework helps conceptualizing IDR …

Functional partitioning of transcriptional regulators by patterned charge blocks

H Lyons, RT Veettil, P Pradhan, C Fornero… - Cell, 2023 - cell.com
Components of transcriptional machinery are selectively partitioned into specific
condensates, often mediated by protein disorder, yet we know little about how this specificity …

Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins

S Das, YH Lin, RM Vernon… - Proceedings of the …, 2020 - National Acad Sciences
Endeavoring toward a transferable, predictive coarse-grained explicit-chain model for
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …

Physics-based computational and theoretical approaches to intrinsically disordered proteins

JE Shea, RB Best, J Mittal - Current opinion in structural biology, 2021 - Elsevier
Highlights•Liquid-liquid phase separation underlies the formation of membraneless
organelles within cells.•Theory and molecular simulations help to relate interactions at the …

The protein folding problem: the role of theory

R Nassar, GL Dignon, RM Razban, KA Dill - Journal of molecular biology, 2021 - Elsevier
The protein folding problem was first articulated as question of how order arose from
disorder in proteins: How did the various native structures of proteins arise from interatomic …

A cyclin-dependent kinase-mediated phosphorylation switch of disordered protein condensation

JM Valverde, G Dubra, M Phillips, A Haider… - Nature …, 2023 - nature.com
Cell cycle transitions result from global changes in protein phosphorylation states triggered
by cyclin-dependent kinases (CDKs). To understand how this complexity produces an …

Proximity to criticality predicts surface properties of biomolecular condensates

AGT Pyo, Y Zhang… - Proceedings of the …, 2023 - National Acad Sciences
It has recently become appreciated that cells self-organize their interiors through the
formation of biomolecular condensates. These condensates, typically formed through liquid …

Theory and simulation of multiphase coexistence in biomolecular mixtures

WM Jacobs - Journal of Chemical Theory and Computation, 2023 - ACS Publications
Biomolecular condensates constitute a newly recognized form of spatial organization in
living cells. Although many condensates are believed to form as a result of phase …

Rules of physical mathematics govern intrinsically disordered proteins

K Ghosh, J Huihui, M Phillips… - Annual Review of …, 2022 - annualreviews.org
In stark contrast to foldable proteins with a unique folded state, intrinsically disordered
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …