Intrinsically disordered protein regions and phase separation: sequence determinants of assembly or lack thereof.
EW Martin, AS Holehouse - Emerging topics in life sciences, 2020 - europepmc.org
Intrinsically disordered protein regions (IDRs)-regions that do not fold into a fixed three-
dimensional structure but instead exist in a heterogeneous ensemble of conformations-have …
dimensional structure but instead exist in a heterogeneous ensemble of conformations-have …
How do intrinsically disordered protein regions encode a driving force for liquid–liquid phase separation?
Highlights•Not all IDRs undergo liquid–liquid phase separation.•IDRs are not necessary for
protein phase separation.•A stickers-and-spacers framework helps conceptualizing IDR …
protein phase separation.•A stickers-and-spacers framework helps conceptualizing IDR …
Functional partitioning of transcriptional regulators by patterned charge blocks
H Lyons, RT Veettil, P Pradhan, C Fornero… - Cell, 2023 - cell.com
Components of transcriptional machinery are selectively partitioned into specific
condensates, often mediated by protein disorder, yet we know little about how this specificity …
condensates, often mediated by protein disorder, yet we know little about how this specificity …
Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins
Endeavoring toward a transferable, predictive coarse-grained explicit-chain model for
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …
Physics-based computational and theoretical approaches to intrinsically disordered proteins
Highlights•Liquid-liquid phase separation underlies the formation of membraneless
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
The protein folding problem: the role of theory
The protein folding problem was first articulated as question of how order arose from
disorder in proteins: How did the various native structures of proteins arise from interatomic …
disorder in proteins: How did the various native structures of proteins arise from interatomic …
A cyclin-dependent kinase-mediated phosphorylation switch of disordered protein condensation
JM Valverde, G Dubra, M Phillips, A Haider… - Nature …, 2023 - nature.com
Cell cycle transitions result from global changes in protein phosphorylation states triggered
by cyclin-dependent kinases (CDKs). To understand how this complexity produces an …
by cyclin-dependent kinases (CDKs). To understand how this complexity produces an …
Proximity to criticality predicts surface properties of biomolecular condensates
It has recently become appreciated that cells self-organize their interiors through the
formation of biomolecular condensates. These condensates, typically formed through liquid …
formation of biomolecular condensates. These condensates, typically formed through liquid …
Theory and simulation of multiphase coexistence in biomolecular mixtures
WM Jacobs - Journal of Chemical Theory and Computation, 2023 - ACS Publications
Biomolecular condensates constitute a newly recognized form of spatial organization in
living cells. Although many condensates are believed to form as a result of phase …
living cells. Although many condensates are believed to form as a result of phase …
Rules of physical mathematics govern intrinsically disordered proteins
K Ghosh, J Huihui, M Phillips… - Annual Review of …, 2022 - annualreviews.org
In stark contrast to foldable proteins with a unique folded state, intrinsically disordered
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …