High-throughput complementary DNA sequencing technologies have advanced our
understanding of transcriptome complexity and regulation. However, these methods lose …

Abstract Motivation Genome Architecture Mapping (GAM) was recently introduced as a
digestion-and ligation-free method to detect chromatin conformation. Orthogonal to existing …

In this thesis, the focus is on data that has network structure and on problems that benefit
from the application of network-based algorithms. We target four research problems of …