[HTML][HTML] The target of rapamycin signalling pathway in ageing and lifespan regulation

I Bjedov, C Rallis - Genes, 2020 - mdpi.com
Ageing is a complex trait controlled by genes and the environment. The highly conserved
mechanistic target of rapamycin signalling pathway (mTOR) is a major regulator of lifespan …

[HTML][HTML] Targeted genome editing of plants and plant cells for biomanufacturing

JF Buyel, E Stöger, L Bortesi - Transgenic Research, 2021 - Springer
Plants have provided humans with useful products since antiquity, but in the last 30 years
they have also been developed as production platforms for small molecules and …

Deciphering D4Z4 CpG methylation gradients in fascioscapulohumeral muscular dystrophy using nanopore sequencing

RJ Butterfield, DM Dunn, B Duval, S Moldt… - Genome …, 2023 - genome.cshlp.org
Fascioscapulohumeral muscular dystrophy (FSHD) is caused by a unique genetic
mechanism that relies on contraction and hypomethylation of the D4Z4 macrosatellite array …

[HTML][HTML] Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly

ME van Breugel, I van Kruijsbergen, C Mittal, C Lieftink… - Molecular Cell, 2023 - cell.com
Transcription of tRNA genes by RNA polymerase III (RNAPIII) is tuned by signaling
cascades. The emerging notion of differential tRNA gene regulation implies the existence of …

[HTML][HTML] The GATA transcription factor Gaf1 represses tRNAs, inhibits growth, and extends chronological lifespan downstream of fission yeast TORC1

M Rodríguez-López, S Gonzalez, O Hillson… - Cell Reports, 2020 - cell.com
Summary Target of Rapamycin Complex 1 (TORC1) signaling promotes growth and aging.
Inhibition of TORC1 leads to reduced protein translation, which promotes longevity. TORC1 …

[HTML][HTML] The choreography of chromatin in RNA polymerase III regulation

ME van Breugel, A Gerber… - Biochemical Society …, 2024 - portlandpress.com
Regulation of eukaryotic gene expression involves a dynamic interplay between the core
transcriptional machinery, transcription factors, and chromatin organization and modification …

[HTML][HTML] PltRNAdb: Plant transfer RNA database

MM Mokhtar, A El Allali - PLoS One, 2022 - journals.plos.org
Transfer RNAs (tRNAs) are intermediate-sized non-coding RNAs found in all organisms that
help translate messenger RNA into protein. Recently, the number of sequenced plant …

Interchangeable parts: the evolutionarily dynamic tRNA population in plant mitochondria

JM Warren, DB Sloan - Mitochondrion, 2020 - Elsevier
Transfer RNAs (tRNAs) remain one of the very few classes of genes still encoded in the
mitochondrial genome. These key components of the protein translation system must …

Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification

JM Warren, T Salinas-Giegé, G Hummel, NL Coots… - RNA biology, 2021 - Taylor & Francis
Differences in tRNA expression have been implicated in a remarkable number of biological
processes. There is growing evidence that tRNA genes can play dramatically different roles …

Predicting transfer RNA gene activity from sequence and genome context

BP Thornlow, J Armstrong, AD Holmes… - Genome …, 2020 - genome.cshlp.org
Transfer RNA (tRNA) genes are among the most highly transcribed genes in the genome
owing to their central role in protein synthesis. However, there is evidence for a broad range …