Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects
KC Beng, RT Corlett - Biodiversity and conservation, 2020 - Springer
Conserving biodiversity in the face of ever-increasing human pressure is hampered by our
lack of basic information on species occurrence, distribution, abundance, habitat …
lack of basic information on species occurrence, distribution, abundance, habitat …
[HTML][HTML] DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
Effective identification of species using short DNA fragments (DNA barcoding and DNA
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …
Biases in bulk: DNA metabarcoding of marine communities and the methodology involved
LM van der Loos, R Nijland - Molecular Ecology, 2021 - Wiley Online Library
With the growing anthropogenic pressure on marine ecosystems, the need for efficient
monitoring of biodiversity grows stronger. DNA metabarcoding of bulk samples is …
monitoring of biodiversity grows stronger. DNA metabarcoding of bulk samples is …
Assessment of BOLD and GenBank–Their accuracy and reliability for the identification of biological materials
KA Meiklejohn, N Damaso, JM Robertson - PloS one, 2019 - journals.plos.org
Taxonomic identification of biological materials can be achieved through DNA barcoding,
where an unknown “barcode” sequence is compared to a reference database. In many …
where an unknown “barcode” sequence is compared to a reference database. In many …
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
Validation of COI metabarcoding primers for terrestrial arthropods
Metabarcoding can rapidly determine the species composition of bulk samples and thus
aids biodiversity and ecosystem assessment. However, it is essential to use primer sets that …
aids biodiversity and ecosystem assessment. However, it is essential to use primer sets that …
GenBank is a reliable resource for 21st century biodiversity research
M Leray, N Knowlton, SL Ho… - Proceedings of the …, 2019 - National Acad Sciences
Traditional methods of characterizing biodiversity are increasingly being supplemented and
replaced by approaches based on DNA sequencing alone. These approaches commonly …
replaced by approaches based on DNA sequencing alone. These approaches commonly …
Metabarcoding a diverse arthropod mock community
TWA Braukmann, NV Ivanova… - Molecular ecology …, 2019 - Wiley Online Library
Although DNA metabarcoding is an attractive approach for monitoring biodiversity, it is often
difficult to detect all the species present in a bulk sample. In particular, sequence recovery …
difficult to detect all the species present in a bulk sample. In particular, sequence recovery …
Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes
The deep ocean is the largest biome on Earth and faces increasing anthropogenic
pressures from climate change and commercial fisheries. Our ability to sustainably manage …
pressures from climate change and commercial fisheries. Our ability to sustainably manage …
COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Mixed community or environmental DNA marker gene sequencing has become a commonly
used technique for biodiversity analyses in freshwater systems. Many cytochrome c oxidase …
used technique for biodiversity analyses in freshwater systems. Many cytochrome c oxidase …