The coral microbiome: towards an understanding of the molecular mechanisms of coral–microbiota interactions

AR Mohamed, MA Ochsenkühn… - FEMS Microbiology …, 2023 - academic.oup.com
Corals live in a complex, multipartite symbiosis with diverse microbes across kingdoms,
some of which are implicated in vital functions, such as those related to resilience against …

Too many false targets for microRNAs: challenges and pitfalls in prediction of miRNA targets and their gene ontology in model and non‐model organisms

A Fridrich, Y Hazan, Y Moran - Bioessays, 2019 - Wiley Online Library
Short (“seed”) or extended base pairing between microRNAs (miRNAs) and their target
RNAs enables post‐transcriptional silencing in many organisms. These interactions allow …

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

M Aranda, Y Li, YJ Liew, S Baumgarten, O Simakov… - Scientific reports, 2016 - nature.com
Despite half a century of research, the biology of dinoflagellates remains enigmatic: they
defy many functional and genetic traits attributed to typical eukaryotic cells. Genomic …

The genome of Aiptasia, a sea anemone model for coral symbiosis

S Baumgarten, O Simakov… - Proceedings of the …, 2015 - National Acad Sciences
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis
between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate …

Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals

CR Voolstra, Y Li, YJ Liew, S Baumgarten, D Zoccola… - Scientific reports, 2017 - nature.com
Stony corals form the foundation of coral reef ecosystems. Their phylogeny is characterized
by a deep evolutionary divergence that separates corals into a robust and complex clade …

Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification

D Zoccola, P Ganot, A Bertucci, N Caminiti-Segonds… - Scientific Reports, 2015 - nature.com
Abstract The bicarbonate ion (HCO3−) is involved in two major physiological processes in
corals, biomineralization and photosynthesis, yet no molecular data on bicarbonate …

Transcriptomic changes with increasing algal symbiont reveal the detailed process underlying establishment of coral-algal symbiosis

I Yuyama, M Ishikawa, M Nozawa, M Yoshida… - Scientific Reports, 2018 - nature.com
To clarify the establishment process of coral-algal symbiotic relationships, coral
transcriptome changes during increasing algal symbiont densities were examined in …

Metatranscriptome analysis of the reef-building coral Orbicella faveolata indicates holobiont response to coral disease

CA Daniels, S Baumgarten, LK Yum… - Frontiers in Marine …, 2015 - frontiersin.org
White Plague Disease (WPD) is implicated in coral reef decline in the Caribbean and is
characterized by microbial community shifts in coral mucus and tissue. Studies thus far have …

Polynomial chaos expansion of random coefficients and the solution of stochastic partial differential equations in the tensor train format

S Dolgov, BN Khoromskij, A Litvinenko… - SIAM/ASA Journal on …, 2015 - SIAM
We apply the tensor train (TT) decomposition to construct the tensor product polynomial
chaos expansion (PCE) of a random field, to solve the stochastic elliptic diffusion PDE with …

Transgenerational adaptation to ocean acidification determines the susceptibility of filter-feeding rotifers to nanoplastics

MS Kim, YH Lee, Y Lee, E Byeon, DH Kim… - Journal of hazardous …, 2024 - Elsevier
The adaptation of marine organisms to the impending challenges presented by ocean
acidification (OA) is essential for their future survival, and mechanisms underlying OA …