Detecting natural selection in genomic data
JJ Vitti, SR Grossman, PC Sabeti - Annual review of genetics, 2013 - annualreviews.org
The past fifty years have seen the development and application of numerous statistical
methods to identify genomic regions that appear to be shaped by natural selection. These …
methods to identify genomic regions that appear to be shaped by natural selection. These …
The search for loci under selection: trends, biases and progress
Detecting genetic variants under selection using FST outlier analysis (OA) and
environmental association analyses (EAAs) are popular approaches that provide insight into …
environmental association analyses (EAAs) are popular approaches that provide insight into …
Ecological genomics meets community‐level modelling of biodiversity: Mapping the genomic landscape of current and future environmental adaptation
MC Fitzpatrick, SR Keller - Ecology letters, 2015 - Wiley Online Library
Local adaptation is a central feature of most species occupying spatially heterogeneous
environments, and may factor critically in responses to environmental change. However …
environments, and may factor critically in responses to environmental change. However …
Evaluating the use of ABBA–BABA statistics to locate introgressed loci
Several methods have been proposed to test for introgression across genomes. One method
tests for a genome-wide excess of shared derived alleles between taxa using Patterson's D …
tests for a genome-wide excess of shared derived alleles between taxa using Patterson's D …
[HTML][HTML] Genotyping-by-sequencing in ecological and conservation genomics
The fields of ecological and conservation genetics have developed greatly in recent
decades through the use of molecular markers to investigate organisms in their natural …
decades through the use of molecular markers to investigate organisms in their natural …
Deep learning for population genetic inference
S Sheehan, YS Song - PLoS computational biology, 2016 - journals.plos.org
Given genomic variation data from multiple individuals, computing the likelihood of complex
population genetic models is often infeasible. To circumvent this problem, we introduce a …
population genetic models is often infeasible. To circumvent this problem, we introduce a …
An overview of current population genomics methods for the analysis of whole‐genome resequencing data in eukaryotes
YXC Bourgeois, BH Warren - Molecular Ecology, 2021 - Wiley Online Library
Characterizing the population history of a species and identifying loci underlying local
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
The determinants of genetic diversity in butterflies
A Mackintosh, DR Laetsch, A Hayward… - Nature …, 2019 - nature.com
Under the neutral theory, genetic diversity is expected to increase with population size.
While comparative analyses have consistently failed to find strong relationships between …
While comparative analyses have consistently failed to find strong relationships between …
On the population dynamics of junk: a review on the population genomics of transposable elements
Y Bourgeois, S Boissinot - Genes, 2019 - mdpi.com
Transposable elements (TEs) play an important role in shaping genomic organization and
structure, and may cause dramatic changes in phenotypes. Despite the genetic load they …
structure, and may cause dramatic changes in phenotypes. Despite the genetic load they …
Conservation genomics of threatened animal species
CC Steiner, AS Putnam, PEA Hoeck… - Annu. Rev. Anim …, 2013 - annualreviews.org
The genomics era has opened up exciting possibilities in the field of conservation biology by
enabling genomic analyses of threatened species that previously were limited to model …
enabling genomic analyses of threatened species that previously were limited to model …