Comparative genomics of defense systems in archaea and bacteria
KS Makarova, YI Wolf, EV Koonin - Nucleic acids research, 2013 - academic.oup.com
Our knowledge of prokaryotic defense systems has vastly expanded as the result of
comparative genomic analysis, followed by experimental validation. This expansion is both …
comparative genomic analysis, followed by experimental validation. This expansion is both …
Stationary phase in gram-negative bacteria
JM Navarro Llorens, A Tormo… - FEMS microbiology …, 2010 - academic.oup.com
Conditions that sustain constant bacterial growth are seldom found in nature. Oligotrophic
environments and competition among microorganisms force bacteria to be able to adapt …
environments and competition among microorganisms force bacteria to be able to adapt …
Defense islands in bacterial and archaeal genomes and prediction of novel defense systems
The arms race between cellular life forms and viruses is a major driving force of evolution. A
substantial fraction of bacterial and archaeal genomes is dedicated to antivirus defense. We …
substantial fraction of bacterial and archaeal genomes is dedicated to antivirus defense. We …
The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair
PC Fineran, TR Blower, IJ Foulds… - Proceedings of the …, 2009 - National Acad Sciences
Various mechanisms exist that enable bacteria to resist bacteriophage infection. Resistance
strategies include the abortive infection (Abi) systems, which promote cell death and limit …
strategies include the abortive infection (Abi) systems, which promote cell death and limit …
Comprehensive Functional Analysis of Mycobacterium tuberculosis Toxin-Antitoxin Systems: Implications for Pathogenesis, Stress Responses, and Evolution
HR Ramage, LE Connolly, JS Cox - PLoS genetics, 2009 - journals.plos.org
Toxin-antitoxin (TA) systems, stress-responsive genetic elements ubiquitous in microbial
genomes, are unusually abundant in the major human pathogen Mycobacterium …
genomes, are unusually abundant in the major human pathogen Mycobacterium …
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
EV Koonin, YI Wolf - Nucleic acids research, 2008 - academic.oup.com
The first bacterial genome was sequenced in 1995, and the first archaeal genome in 1996.
Soon after these breakthroughs, an exponential rate of genome sequencing was …
Soon after these breakthroughs, an exponential rate of genome sequencing was …
[HTML][HTML] Bacterial toxin-antitoxin modules: classification, functions, and association with persistence
Toxin-antitoxin (TA) modules are ubiquitous gene loci among bacteria and are comprised of
a toxin part and its cognate antitoxin part. Under normal physiological conditions, antitoxin …
a toxin part and its cognate antitoxin part. Under normal physiological conditions, antitoxin …
Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
KS Makarova, YI Wolf, EV Koonin - Biology direct, 2009 - Springer
Background The prokaryotic toxin-antitoxin systems (TAS, also referred to as TA loci) are
widespread, mobile two-gene modules that can be viewed as selfish genetic elements …
widespread, mobile two-gene modules that can be viewed as selfish genetic elements …
What traits are carried on mobile genetic elements, and why?
Although similar to any other organism, prokaryotes can transfer genes vertically from
mother cell to daughter cell, they can also exchange certain genes horizontally. Genes can …
mother cell to daughter cell, they can also exchange certain genes horizontally. Genes can …
Molecular control of bacterial death and lysis
KC Rice, KW Bayles - Microbiology and molecular biology reviews, 2008 - Am Soc Microbiol
Although the phenomenon of bacterial cell death and lysis has been studied for over 100
years, the contribution of these important processes to bacterial physiology and …
years, the contribution of these important processes to bacterial physiology and …