Comparative genomics of defense systems in archaea and bacteria

KS Makarova, YI Wolf, EV Koonin - Nucleic acids research, 2013 - academic.oup.com
Our knowledge of prokaryotic defense systems has vastly expanded as the result of
comparative genomic analysis, followed by experimental validation. This expansion is both …

Stationary phase in gram-negative bacteria

JM Navarro Llorens, A Tormo… - FEMS microbiology …, 2010 - academic.oup.com
Conditions that sustain constant bacterial growth are seldom found in nature. Oligotrophic
environments and competition among microorganisms force bacteria to be able to adapt …

Defense islands in bacterial and archaeal genomes and prediction of novel defense systems

KS Makarova, YI Wolf, S Snir, EV Koonin - Journal of bacteriology, 2011 - Am Soc Microbiol
The arms race between cellular life forms and viruses is a major driving force of evolution. A
substantial fraction of bacterial and archaeal genomes is dedicated to antivirus defense. We …

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

PC Fineran, TR Blower, IJ Foulds… - Proceedings of the …, 2009 - National Acad Sciences
Various mechanisms exist that enable bacteria to resist bacteriophage infection. Resistance
strategies include the abortive infection (Abi) systems, which promote cell death and limit …

Comprehensive Functional Analysis of Mycobacterium tuberculosis Toxin-Antitoxin Systems: Implications for Pathogenesis, Stress Responses, and Evolution

HR Ramage, LE Connolly, JS Cox - PLoS genetics, 2009 - journals.plos.org
Toxin-antitoxin (TA) systems, stress-responsive genetic elements ubiquitous in microbial
genomes, are unusually abundant in the major human pathogen Mycobacterium …

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

EV Koonin, YI Wolf - Nucleic acids research, 2008 - academic.oup.com
The first bacterial genome was sequenced in 1995, and the first archaeal genome in 1996.
Soon after these breakthroughs, an exponential rate of genome sequencing was …

[HTML][HTML] Bacterial toxin-antitoxin modules: classification, functions, and association with persistence

G Singh, M Yadav, C Ghosh, JS Rathore - Current Research in Microbial …, 2021 - Elsevier
Toxin-antitoxin (TA) modules are ubiquitous gene loci among bacteria and are comprised of
a toxin part and its cognate antitoxin part. Under normal physiological conditions, antitoxin …

Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes

KS Makarova, YI Wolf, EV Koonin - Biology direct, 2009 - Springer
Background The prokaryotic toxin-antitoxin systems (TAS, also referred to as TA loci) are
widespread, mobile two-gene modules that can be viewed as selfish genetic elements …

What traits are carried on mobile genetic elements, and why?

DJ Rankin, EPC Rocha, SP Brown - Heredity, 2011 - nature.com
Although similar to any other organism, prokaryotes can transfer genes vertically from
mother cell to daughter cell, they can also exchange certain genes horizontally. Genes can …

Molecular control of bacterial death and lysis

KC Rice, KW Bayles - Microbiology and molecular biology reviews, 2008 - Am Soc Microbiol
Although the phenomenon of bacterial cell death and lysis has been studied for over 100
years, the contribution of these important processes to bacterial physiology and …