Interactions in active colloids

B Liebchen, AK Mukhopadhyay - Journal of Physics: Condensed …, 2021 - iopscience.iop.org
The past two decades have seen a remarkable progress in the development of synthetic
colloidal agents which are capable of creating directed motion in an unbiased environment …

Overview of mathematical approaches used to model bacterial chemotaxis II: bacterial populations

MJ Tindall, PK Maini, SL Porter, JP Armitage - Bulletin of mathematical …, 2008 - Springer
We review the application of mathematical modeling to understanding the behavior of
populations of chemotactic bacteria. The application of continuum mathematical models, in …

Neural network aided approximation and parameter inference of non-Markovian models of gene expression

Q Jiang, X Fu, S Yan, R Li, W Du, Z Cao, F Qian… - Nature …, 2021 - nature.com
Non-Markovian models of stochastic biochemical kinetics often incorporate explicit time
delays to effectively model large numbers of intermediate biochemical processes. Analysis …

[图书][B] Mathematical modeling of biological pattern formation

A Deutsch, S Dormann - 2005 - Springer
In this chapter we have presented mathematical modeling approaches to biological pattern
formation. While reaction-diffusion models are appropriate to describe the spatio-temporal …

Mathematical models for chemotaxis and their applications in self-organisation phenomena

KJ Painter - Journal of theoretical biology, 2019 - Elsevier
Chemotaxis is a fundamental guidance mechanism of cells and organisms, responsible for
attracting microbes to food, embryonic cells into developing tissues, immune cells to …

Non-reciprocity across scales in active mixtures

A Dinelli, J O'Byrne, A Curatolo, Y Zhao… - Nature …, 2023 - nature.com
In active matter, particles typically experience mediated interactions, which are not
constrained by Newton's third law and are therefore generically non-reciprocal. Non …

A cell-centered approach to developmental biology

RMH Merks, JA Glazier - Physica A: Statistical Mechanics and its …, 2005 - Elsevier
Explaining embryonic development of multicellular organisms requires insight into complex
interactions between genetic regulation and physical, generic mechanisms at multiple …

[HTML][HTML] Mechanochemical control of mesenchymal condensation and embryonic tooth organ formation

T Mammoto, A Mammoto, Y Torisawa, T Tat, A Gibbs… - Developmental cell, 2011 - cell.com
Mesenchymal condensation is critical for organogenesis, yet little is known about how this
process is controlled. Here we show that Fgf8 and Sema3f, produced by early dental …

A multiscale model of thrombus development

Z Xu, N Chen, MM Kamocka… - Journal of the Royal …, 2008 - royalsocietypublishing.org
A two-dimensional multiscale model is introduced for studying formation of a thrombus (clot)
in a blood vessel. It involves components for modelling viscous, incompressible blood …

Learning differential equation models from stochastic agent-based model simulations

JT Nardini, RE Baker… - Journal of the Royal …, 2021 - royalsocietypublishing.org
Agent-based models provide a flexible framework that is frequently used for modelling many
biological systems, including cell migration, molecular dynamics, ecology and epidemiology …