Best practices for analysing microbiomes
Complex microbial communities shape the dynamics of various environments, ranging from
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
Functional effects of the microbiota in chronic respiratory disease
The composition of the lung microbiome is increasingly well characterised, with changes in
microbial diversity or abundance observed in association with several chronic respiratory …
microbial diversity or abundance observed in association with several chronic respiratory …
Microbiome-wide association studies link dynamic microbial consortia to disease
Rapid advances in DNA sequencing, metabolomics, proteomics and computational tools are
dramatically increasing access to the microbiome and identification of its links with disease …
dramatically increasing access to the microbiome and identification of its links with disease …
Molecular networking as a drug discovery, drug metabolism, and precision medicine strategy
Molecular networking is a tandem mass spectrometry (MS/MS) data organizational
approach that has been recently introduced in the drug discovery, metabolomics, and …
approach that has been recently introduced in the drug discovery, metabolomics, and …
The gut–liver axis in sepsis: interaction mechanisms and therapeutic potential
X Zhang, H Liu, K Hashimoto, S Yuan, J Zhang - Critical care, 2022 - Springer
Sepsis is a potentially fatal condition caused by dysregulation of the body's immune
response to an infection. Sepsis-induced liver injury is considered a strong independent …
response to an infection. Sepsis-induced liver injury is considered a strong independent …
Computational metabolomics: a framework for the million metabolome
“Sola dosis facit venenum.” These words of Paracelsus,“the dose makes the poison”, can
lead to a cavalier attitude concerning potential toxicities of the vast array of low abundance …
lead to a cavalier attitude concerning potential toxicities of the vast array of low abundance …
Recent advances in metabolism and toxicity of tyrosine kinase inhibitors
Q Zhao, ZE Wu, B Li, F Li - Pharmacology & Therapeutics, 2022 - Elsevier
Small molecule tyrosine kinase inhibitors (TKIs) are widely used as anticancer drugs
approved by US FDA. However, the toxicities of TKIs to multiple organs have greatly limited …
approved by US FDA. However, the toxicities of TKIs to multiple organs have greatly limited …
[HTML][HTML] A restructuring of microbiome niche space is associated with Elexacaftor-Tezacaftor-Ivacaftor therapy in the cystic fibrosis lung
LM Sosinski, KA Neugebauer, LAJ Ghuneim… - Journal of Cystic …, 2022 - Elsevier
Abstract Background Elexacaftor-Tezacaftor-Ivacaftor (ETI) therapy is showing promising
efficacy for treatment of cystic fibrosis (CF) and is becoming more widely available since …
efficacy for treatment of cystic fibrosis (CF) and is becoming more widely available since …
Longitudinal microbial and molecular dynamics in the cystic fibrosis lung after Elexacaftor–Tezacaftor–Ivacaftor therapy
Background Cystic fibrosis (CF) is a genetic disorder causing poor mucociliary clearance in
the airways and subsequent respiratory infection. The recently approved triple therapy …
the airways and subsequent respiratory infection. The recently approved triple therapy …
Uncovering the Carboxylated Metabolome in Gut Microbiota–Host Co-metabolism: A Chemical Derivatization-Molecular Networking Approach
YZ Wang, YY Chen, XZ Wu, PR Bai, N An… - Analytical …, 2023 - ACS Publications
Gut microbiota–host co-metabolites serve as essential mediators of communication between
the host and gut microbiota. They provide nutrient sources for host cells and regulate gut …
the host and gut microbiota. They provide nutrient sources for host cells and regulate gut …