Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

Next-generation physiology approaches to study microbiome function at single cell level

R Hatzenpichler, V Krukenberg, RL Spietz… - Nature Reviews …, 2020 - nature.com
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …

Microbial growth under drought is confined to distinct taxa and modified by potential future climate conditions

D Metze, J Schnecker, A Canarini… - Nature …, 2023 - nature.com
Climate change increases the frequency and intensity of drought events, affecting soil
functions including carbon sequestration and nutrient cycling, which are driven by growing …

Environmental fluctuations and their effects on microbial communities, populations and individuals

J Nguyen, J Lara-Gutiérrez… - FEMS microbiology …, 2021 - academic.oup.com
From the homeostasis of human health to the cycling of Earth's elements, microbial activities
underlie environmental, medical and industrial processes. These activities occur in chemical …

Microbial functional diversity: from concepts to applications

A Escalas, L Hale, JW Voordeckers… - Ecology and …, 2019 - Wiley Online Library
Functional diversity is increasingly recognized by microbial ecologists as the essential link
between biodiversity patterns and ecosystem functioning, determining the trophic …

Glacier ice archives nearly 15,000-year-old microbes and phages

ZP Zhong, F Tian, S Roux, MC Gazitúa, NE Solonenko… - Microbiome, 2021 - Springer
Background Glacier ice archives information, including microbiology, that helps reveal
paleoclimate histories and predict future climate change. Though glacier-ice microbes are …

Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics

HZ Li, K Yang, H Liao, SB Lassen… - Proceedings of the …, 2022 - National Acad Sciences
Antimicrobial resistance (AMR) in soils represents a serious risk to human health through
the food chain and human–nature contact. However, the active antibiotic-resistant bacteria …

Microfluidics for rapid detection of live pathogens

C Spatola Rossi, F Coulon, S Ma… - Advanced Functional …, 2023 - Wiley Online Library
Rapid, sensitive, and selective detection of live pathogens remains a key priority for quality
control and risk assessment. While conventional methods often require complicated …

Microbiome rescue: directing resilience of environmental microbial communities

A Shade - Current Opinion in Microbiology, 2023 - Elsevier
Highlights•Microbiome management can maintain functions for systems facing climate
change.•Microbiome rescue reintroduces functional members lost to disturbance.•Rescue …

Consider the anoxic microsite: acknowledging and appreciating spatiotemporal redox heterogeneity in soils and sediments

EM Lacroix, M Aeppli, K Boye, E Brodie… - ACS Earth and Space …, 2023 - ACS Publications
Reduction–oxidation (redox) reactions underlie essentially all biogeochemical cycles. Like
most soil properties and processes, redox is spatiotemporally heterogeneous. However …