Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

The causes and consequences of subgenome dominance in hybrids and recent polyploids

KA Bird, R VanBuren, JR Puzey, PP Edger - New Phytologist, 2018 - Wiley Online Library
Contents Summary 87 I. Introduction 87 II. Evolution in action: subgenome dominance within
newly formed hybrids and polyploids 88 III. Summary and future directions 90 …

Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance

PF Ma, YL Liu, C Guo, G Jin, ZH Guo, L Mao… - Nature Genetics, 2024 - nature.com
Polyploidy (genome duplication) is a pivotal force in evolution. However, the interactions
between parental genomes in a polyploid nucleus, frequently involving subgenome …

[PDF][PDF] Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

M Colle, CP Leisner, CM Wai, S Ou, KA Bird… - …, 2019 - academic.oup.com
Abstract Background Highbush blueberry (Vaccinium corymbosum) has long been
consumed for its unique flavor and composition of health-promoting phytonutrients …

The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio

P Xu, J Xu, G Liu, L Chen, Z Zhou, W Peng… - Nature …, 2019 - nature.com
Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole
genome duplication and provides a model to study polyploid genome evolution in …

Genome structure-based Juglandaceae phylogenies contradict alignment-based phylogenies and substitution rates vary with DNA repair genes

YM Ding, XX Pang, Y Cao, WP Zhang… - Nature …, 2023 - nature.com
In lineages of allopolyploid origin, sets of homoeologous chromosomes may coexist that
differ in gene content and syntenic structure. Presence or absence of genes and …

Genome biology of the paleotetraploid perennial biomass crop Miscanthus

T Mitros, AM Session, BT James, GA Wu… - Nature …, 2020 - nature.com
Miscanthus is a perennial wild grass that is of global importance for paper production,
roofing, horticultural plantings, and an emerging highly productive temperate biomass crop …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

Genomic evidence for homoploid hybrid speciation between ancestors of two different genera

Z Wang, M Kang, J Li, Z Zhang, Y Wang, C Chen… - Nature …, 2022 - nature.com
Homoploid hybrid speciation (HHS) has been increasingly recognized as occurring widely
during species diversification of both plants and animals. However, previous studies on HHS …