Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

Rational discovery of molecular glue degraders via scalable chemical profiling

C Mayor-Ruiz, S Bauer, M Brand, Z Kozicka… - Nature chemical …, 2020 - nature.com
Targeted protein degradation is a new therapeutic modality based on drugs that destabilize
proteins by inducing their proximity to E3 ubiquitin ligases. Of particular interest are …

Whole-genome annotation with BRAKER

KJ Hoff, A Lomsadze, M Borodovsky… - Gene prediction: methods …, 2019 - Springer
BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel
eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS …

[HTML][HTML] BCG vaccination induces long-term functional reprogramming of human neutrophils

SJ Moorlag, YA Rodriguez-Rosales, J Gillard… - Cell reports, 2020 - cell.com
The tuberculosis vaccine bacillus Calmette-Guérin (BCG) protects against some
heterologous infections, probably via induction of non-specific innate immune memory in …

BCG vaccination protects against experimental viral infection in humans through the induction of cytokines associated with trained immunity

RJW Arts, SJ Moorlag, B Novakovic, Y Li, SY Wang… - Cell host & …, 2018 - cell.com
The tuberculosis vaccine bacillus Calmette-Guérin (BCG) has heterologous beneficial
effects against non-related infections. The basis of these effects has been poorly explored in …

Multi-platform discovery of haplotype-resolved structural variation in human genomes

MJP Chaisson, AD Sanders, X Zhao, A Malhotra… - Nature …, 2019 - nature.com
The incomplete identification of structural variants (SVs) from whole-genome sequencing
data limits studies of human genetic diversity and disease association. Here, we apply a …

Metabolic induction of trained immunity through the mevalonate pathway

S Bekkering, RJW Arts, B Novakovic, I Kourtzelis… - Cell, 2018 - cell.com
Innate immune cells can develop long-term memory after stimulation by microbial products
during infections or vaccinations. Here, we report that metabolic signals can induce trained …

Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy

T Davoli, H Uno, EC Wooten, SJ Elledge - Science, 2017 - science.org
INTRODUCTION Aneuploidy, also known as somatic copy number alterations (SCNAs), is
widespread in human cancers and has been proposed to drive tumorigenesis. The …

Functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders

A Hanzl, R Casement, H Imrichova, SJ Hughes… - Nature chemical …, 2023 - nature.com
Targeted protein degradation is a novel pharmacology established by drugs that recruit
target proteins to E3 ubiquitin ligases. Based on the structure of the degrader and the target …

Inherited and de novo genetic risk for autism impacts shared networks

EK Ruzzo, L Pérez-Cano, JY Jung, L Wang… - Cell, 2019 - cell.com
We performed a comprehensive assessment of rare inherited variation in autism spectrum
disorder (ASD) by analyzing whole-genome sequences of 2,308 individuals from families …