A practical guide to machine-learning scoring for structure-based virtual screening

VK Tran-Nguyen, M Junaid, S Simeon, PJ Ballester - Nature Protocols, 2023 - nature.com
Abstract Structure-based virtual screening (SBVS) via docking has been used to discover
active molecules for a range of therapeutic targets. Chemical and protein data sets that …

[HTML][HTML] TRIB3 supports breast cancer stemness by suppressing FOXO1 degradation and enhancing SOX2 transcription

J Yu, W Sun, Z Wang, X Liang, F Hua, K Li, X Lv… - Nature …, 2019 - nature.com
The existence of breast cancer stem cells (BCSCs) is a major reason underlying cancer
metastasis and recurrence after chemotherapy and radiotherapy. Targeting BCSCs may …

[HTML][HTML] Vetinformatics from functional genomics to drug discovery: insights into decoding complex molecular mechanisms of livestock systems in veterinary science

RK Pathak, JM Kim - Frontiers in Veterinary Science, 2022 - frontiersin.org
Having played important roles in human growth and development, livestock animals are
regarded as integral parts of society. However, industrialization has depleted natural …

The inhibitory effect of some natural bioactive compounds against SARS-CoV-2 main protease: insights from molecular docking analysis and molecular dynamic …

DA Abdelrheem, SA Ahmed… - … Science and Health …, 2020 - Taylor & Francis
This work aimed at evaluating the inhibitory effect of ten natural bioactive compounds (1–10)
as potential inhibitors of SARS-CoV-2-3CL main protease (PDB ID: 6LU7) and SARS-CoV …

[HTML][HTML] Destabilizing the structural integrity of COVID-19 by caulerpin and its derivatives along with some antiviral drugs: An in silico approaches for a combination …

SA Ahmed, DA Abdelrheem, HRA El-Mageed… - Structural Chemistry, 2020 - Springer
Abstract Presently, the SARS-CoV-2 (COVID-19) pandemic has been spreading throughout
the world. Some drugs such as lopinavir, simeprevir, hydroxychloroquine, chloroquine, and …

[HTML][HTML] Hesperetin activated SIRT1 neutralizes cadmium effects on the early bovine embryo development

M Idrees, V Kumar, AM Khan, MD Joo, Z Uddin… - Theriogenology, 2022 - Elsevier
Cadmium (Cd) is a major environmental contaminant that has been linked to oocyte quality
reduction and early embryo mortality in various in vivo studies. In this study, we investigated …

[HTML][HTML] Histidine Metabolism and IGPD Play a Key Role in Cefquinome Inhibiting Biofilm Formation of Staphylococcus xylosus

Y Zhou, C Xu, Y Yang, X Xing, X Liu, Q Qu… - Frontiers in …, 2018 - frontiersin.org
Staphylococcus xylosus (S. xylosus) is an AT-rich and coagulase-negative Staphylococcus
(CNS). It is normally regarded as non-pathogenic, however, recent studies have …

[HTML][HTML] Cycloastragenol activation of telomerase improves β-Klotho protein level and attenuates age-related malfunctioning in ovarian tissues

M Idrees, V Kumar, AM Khan, MD Joo, KW Lee… - Mechanisms of Ageing …, 2023 - Elsevier
Age-related deterioration in the reproductive capacity of women is directly related to the poor
developmental potential of ovarian follicles. Although telomerase plays a key role in female …

[HTML][HTML] Rutin, A Natural Inhibitor of IGPD Protein, Partially Inhibits Biofilm Formation in Staphylococcus xylosus ATCC700404 in vitro and in vivo

Q Qu, W Cui, X Xing, R Zou, X Huang… - Frontiers in …, 2021 - frontiersin.org
Staphylococcus xylosus (S. xylosus) has become an emerging opportunistic pathogen due
to its strong biofilm formation ability. Simultaneously, the biofilm of bacteria plays an …

Effects of acetylation on dissociation and phosphorylation of actomyosin in postmortem ovine muscle during incubation at 4° C in vitro

Y Zhang, X Li, D Zhang, Y Bai, X Wang - Food Chemistry, 2021 - Elsevier
This study aimed to assess the effects of acetylation levels on actomyosin disassociation
and phosphorylation of lamb during incubation at 4° C. Samples of whole proteins from lamb …