Integration site selection by retroviruses and transposable elements in eukaryotes

T Sultana, A Zamborlini, G Cristofari… - Nature Reviews …, 2017 - nature.com
Transposable elements and retroviruses are found in most genomes, can be pathogenic
and are widely used as gene-delivery and functional genomics tools. Exploring whether …

Harnessing eukaryotic retroelement proteins for transgene insertion into human safe-harbor loci

X Zhang, B Van Treeck, CA Horton, JJR McIntyre… - Nature …, 2024 - nature.com
Current approaches for inserting autonomous transgenes into the genome, such as CRISPR–
Cas9 or virus-based strategies, have limitations including low efficiency and high risk of …

Integration, regulation, and long‐term stability of R2 retrotransposons

TH Eickbush, DG Eickbush - Mobile DNA III, 2015 - Wiley Online Library
R2 elements exclusively insert into 28S rRNA genes (Figure 1). As a result of this specificity,
R2 is one of the more tractable mobile elements to study and, thus, is now among the best …

Site‐specific non‐LTR retrotransposons

H Fujiwara - Mobile DNA III, 2015 - Wiley Online Library
DNA transposons are the mobile elements that move by a “cut and paste” mechanism (1, 2).
In contrast, retrotransposons encode reverse transcriptase, and move by a “copy and paste” …

Molecular Pathways and Pigments Underlying the Colors of the Pearl Oyster Pinctada margaritifera var. cumingii (Linnaeus 1758)

PL Stenger, CL Ky, C Reisser, J Duboisset, H Dicko… - Genes, 2021 - mdpi.com
The shell color of the Mollusca has attracted naturalists and collectors for hundreds of years,
while the molecular pathways regulating pigment production and the pigments themselves …

Conserved and divergent DNA recognition specificities and functions of R2 retrotransposon N-terminal domains

RJ Lee, CA Horton, B Van Treeck, JJR McIntyre… - Cell Reports, 2024 - cell.com
R2 non-long terminal repeat (non-LTR) retrotransposons are among the most extensively
distributed mobile genetic elements in multicellular eukaryotes and show promise for …

Endonuclease domain of non-LTR retrotransposons: loss-of-function mutants and modeling of the R2Bm endonuclease

A Govindaraju, JD Cortez, B Reveal… - Nucleic acids …, 2016 - academic.oup.com
Non-LTR retrotransposons are an important class of mobile elements that insert into host
DNA by target-primed reverse transcription (TPRT). Non-LTR retrotransposons must bind to …

Globular domain structure and function of restriction-like-endonuclease LINEs: similarities to eukaryotic splicing factor Prp8

MM Mahbub, SM Chowdhury, SM Christensen - Mobile DNA, 2017 - Springer
Background R2 elements are a clade of early branching Long Interspersed Elements
(LINEs). LINEs are retrotransposable elements whose replication can have profound effects …

A Survey of Transposon Landscapes in the Putative Ancient Asexual Ostracod Darwinula stevensoni

I Schön, F Rodriguez, M Dunn, K Martens, M Shribak… - Genes, 2021 - mdpi.com
How asexual reproduction shapes transposable element (TE) content and diversity in
eukaryotic genomes remains debated. We performed an initial survey of TE load and …

The linker region of LINEs modulates DNA cleavage and DNA polymerization

M Pradhan, A Govindaraju, A Jagdish… - Analytical …, 2020 - Elsevier
Long interspersed elements (LINEs) replicate by target primed reverse transcription (TPRT).
Insertion involves two half reactions. Each half reaction involves DNA cleavage followed by …