Attention is all you need: utilizing attention in AI-enabled drug discovery

Y Zhang, C Liu, M Liu, T Liu, H Lin… - Briefings in …, 2024 - academic.oup.com
Recently, attention mechanism and derived models have gained significant traction in drug
development due to their outstanding performance and interpretability in handling complex …

[HTML][HTML] Advancing drug discovery with deep attention neural networks

A Lavecchia - Drug Discovery Today, 2024 - Elsevier
In the dynamic field of drug discovery, deep attention neural networks are revolutionizing our
approach to complex data. This review explores the attention mechanism and its extended …

Deep learning tools for advancing drug discovery and development

S Nag, ATK Baidya, A Mandal, AT Mathew, B Das… - 3 Biotech, 2022 - Springer
A few decades ago, drug discovery and development were limited to a bunch of medicinal
chemists working in a lab with enormous amount of testing, validations, and synthetic …

Pharmacophoric-constrained heterogeneous graph transformer model for molecular property prediction

Y Jiang, S Jin, X Jin, X Xiao, W Wu, X Liu… - Communications …, 2023 - nature.com
Informative representation of molecules is a crucial prerequisite in AI-driven drug design and
discovery. Pharmacophore information including functional groups and chemical reactions …

Artificial intelligence as a smart approach to develop antimicrobial drug molecules: A paradigm to combat drug-resistant infections

A Talat, AU Khan - Drug Discovery Today, 2023 - Elsevier
Highlights•Artificial intelligence can combat AMR by discovering antibiotic alternatives.•AI is
fast, cost-efficient, minimum labour dependant strategy.•The chances of failure in AI based …

Deciphering ligand–receptor-mediated intercellular communication based on ensemble deep learning and the joint scoring strategy from single-cell transcriptomic …

L Peng, J Tan, W Xiong, L Zhang, Z Wang… - Computers in Biology …, 2023 - Elsevier
Background: Cell–cell communication in a tumor microenvironment is vital to tumorigenesis,
tumor progression and therapy. Intercellular communication inference helps understand …

The art of finding the right drug target: emerging methods and strategies

ZC Jia, X Yang, YK Wu, M Li, D Das, MX Chen… - Pharmacological …, 2024 - Elsevier
Drug targets are specific molecules in biological tissues and body fluids that interact with
drugs. Drug target discovery is a key component of drug discovery and is essential for the …

Predicting miRNA–disease associations via learning multimodal networks and fusing mixed neighborhood information

Z Lou, Z Cheng, H Li, Z Teng, Y Liu… - Briefings in …, 2022 - academic.oup.com
Motivation In recent years, a large number of biological experiments have strongly shown
that miRNAs play an important role in understanding disease pathogenesis. The discovery …

Metapath-aggregated heterogeneous graph neural network for drug–target interaction prediction

M Li, X Cai, S Xu, H Ji - Briefings in Bioinformatics, 2023 - academic.oup.com
Drug–target interaction (DTI) prediction is an essential step in drug repositioning. A few
graph neural network (GNN)-based methods have been proposed for DTI prediction using …

MCANet: shared-weight-based MultiheadCrossAttention network for drug–target interaction prediction

J Bian, X Zhang, X Zhang, D Xu… - Briefings in …, 2023 - academic.oup.com
Accurate and effective drug–target interaction (DTI) prediction can greatly shorten the drug
development lifecycle and reduce the cost of drug development. In the deep-learning-based …