Predicting drug–disease associations through layer attention graph convolutional network

Z Yu, F Huang, X Zhao, W Xiao… - Briefings in …, 2021 - academic.oup.com
Background: Determining drug–disease associations is an integral part in the process of
drug development. However, the identification of drug–disease associations through wet …

Review on predicting pairwise relationships between human microbes, drugs and diseases: from biological data to computational models

L Wang, Y Tan, X Yang, L Kuang… - Briefings in …, 2022 - academic.oup.com
In recent years, with the rapid development of techniques in bioinformatics and life science,
a considerable quantity of biomedical data has been accumulated, based on which …

Introduction to focus issue: When machine learning meets complex systems: Networks, chaos, and nonlinear dynamics

Y Tang, J Kurths, W Lin, E Ott, L Kocarev - Chaos: An Interdisciplinary …, 2020 - pubs.aip.org
Machine learning (ML), a subset of artificial intelligence, refers to methods that have the
ability to “learn” from experience, enabling them to carry out designated tasks. Examples of …

REDDA: Integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction

Y Gu, S Zheng, Q Yin, R Jiang, J Li - Computers in biology and medicine, 2022 - Elsevier
Computational drug repositioning is an effective way to find new indications for existing
drugs, thus can accelerate drug development and reduce experimental costs. Recently …

GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest

QW Wu, JF Xia, JC Ni, CH Zheng - Briefings in bioinformatics, 2021 - academic.oup.com
Predicting disease-related long non-coding RNAs (lncRNAs) is beneficial to finding of new
biomarkers for prevention, diagnosis and treatment of complex human diseases. In this …

Partner-specific drug repositioning approach based on graph convolutional network

X Sun, B Wang, J Zhang, M Li - IEEE Journal of Biomedical and …, 2022 - ieeexplore.ieee.org
Drug repositioning identifies novel therapeutic potentials for existing drugs and is
considered an attractive approach due to the opportunity for reduced development timelines …

[HTML][HTML] An explainable framework for drug repositioning from disease information network

C He, L Duan, H Zheng, L Song, M Huang - Neurocomputing, 2022 - Elsevier
Exploring efficient and high-accuracy computational drug repositioning methods has
become a popular and attractive topic in drug development. This technology can …

PrGeFNE: predicting disease-related genes by fast network embedding

J Xiang, NR Zhang, JS Zhang, XY Lv, M Li - Methods, 2021 - Elsevier
Identifying disease-related genes is of importance for understanding of molecule
mechanisms of diseases, as well as diagnosis and treatment of diseases. Many …

Computational approaches for predicting drug-disease associations: a comprehensive review

Z Huang, Z Xiao, C Ao, L Guan, L Yu - Frontiers of Computer Science, 2025 - Springer
In recent decades, traditional drug research and development have been facing challenges
such as high cost, long timelines, and high risks. To address these issues, many …

A Multimodal Framework for Improving in Silico Drug Repositioning With the Prior Knowledge From Knowledge Graphs

Z Xiong, F Huang, Z Wang, S Liu… - IEEE/ACM Transactions …, 2021 - ieeexplore.ieee.org
Drug repositioning/repurposing is a very important approach towards identifying novel
treatments for diseases in drug discovery. Recently, large-scale biological datasets are …