The Genome 10K Project: a way forward
KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …
genome scientists determined to facilitate the sequencing and analysis of the complete …
Genome-wide scans for footprints of natural selection
TK Oleksyk, MW Smith… - … Transactions of the …, 2010 - royalsocietypublishing.org
Detecting recent selected 'genomic footprints' applies directly to the discovery of disease
genes and in the imputation of the formative events that molded modern population genetic …
genes and in the imputation of the formative events that molded modern population genetic …
Earth BioGenome Project: Sequencing life for the future of life
Increasing our understanding of Earth's biodiversity and responsibly stewarding its
resources are among the most crucial scientific and social challenges of the new …
resources are among the most crucial scientific and social challenges of the new …
The Peach v2. 0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
Background The availability of the peach genome sequence has fostered relevant research
in peach and related Prunus species enabling the identification of genes underlying …
in peach and related Prunus species enabling the identification of genes underlying …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication
Genomic resources for hundreds of species of evolutionary, agricultural, economic, and
medical importance are unavailable due to the expense of well-assembled genome …
medical importance are unavailable due to the expense of well-assembled genome …
New approaches for genome assembly and scaffolding
Affordable, high-throughput DNA sequencing has accelerated the pace of genome
assembly over the past decade. Genome assemblies from high-throughput, short-read …
assembly over the past decade. Genome assemblies from high-throughput, short-read …
Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools
JL Fierst - Frontiers in genetics, 2015 - frontiersin.org
Modern high-throughput DNA sequencing has made it possible to inexpensively produce
genome sequences, but in practice many of these draft genomes are fragmented and …
genome sequences, but in practice many of these draft genomes are fragmented and …
Multiple recent horizontal transfers of a large genomic region in cheese making fungi
K Cheeseman, J Ropars, P Renault, J Dupont… - Nature …, 2014 - nature.com
While the extent and impact of horizontal transfers in prokaryotes are widely acknowledged,
their importance to the eukaryotic kingdom is unclear and thought by many to be anecdotal …
their importance to the eukaryotic kingdom is unclear and thought by many to be anecdotal …
Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes
Background African cichlid fishes are well known for their rapid radiations and are a model
system for studying evolutionary processes. Here we compare multiple, high-quality …
system for studying evolutionary processes. Here we compare multiple, high-quality …