Dielectric continuum methods for quantum chemistry
JM Herbert - Wiley Interdisciplinary Reviews: Computational …, 2021 - Wiley Online Library
This review describes the theory and implementation of implicit solvation models based on
continuum electrostatics. Within quantum chemistry this formalism is sometimes …
continuum electrostatics. Within quantum chemistry this formalism is sometimes …
Determination of the absolute solvation free energy and enthalpy of the proton in solutions
The absolute solvation energies (free energy and enthalpy) of the proton in solution is of
great importance for biological and chemical processes in that solution. The absolute …
great importance for biological and chemical processes in that solution. The absolute …
Uncovering differences in hydration free energies and structures for model compound mimics of charged side chains of amino acids
Free energies of hydration are of fundamental interest for modeling and understanding
conformational and phase equilibria of macromolecular solutes in aqueous phases. Of …
conformational and phase equilibria of macromolecular solutes in aqueous phases. Of …
Absolute proton hydration free energy, surface potential of water, and redox potential of the hydrogen electrode from first principles: QM/MM MD free-energy …
TS Hofer, PH Hünenberger - The Journal of chemical physics, 2018 - pubs.aip.org
Absolute proton hydration free energy, surface potential of water, and redox potential of the
hydrogen electrode from first principles: QM/MM MD free-energy simulations of sodium and …
hydrogen electrode from first principles: QM/MM MD free-energy simulations of sodium and …
Force field benchmark of amino acids: I. hydration and diffusion in different water models
Thermodynamic and kinetic properties are of critical importance for the applicability of
computational models to biomolecules such as proteins. Here we present an extensive …
computational models to biomolecules such as proteins. Here we present an extensive …
Rational design of nonbonded point charge models for divalent metal cations with Lennard-Jones 12-6 potential
Exploring a metal-involved biochemical process at a molecular level often requires a
reliable description of metal properties in aqueous solution by classical nonbonded models …
reliable description of metal properties in aqueous solution by classical nonbonded models …
QligFEP: an automated workflow for small molecule free energy calculations in Q
The process of ligand binding to a biological target can be represented as the equilibrium
between the relevant solvated and bound states of the ligand. This which is the basis of …
between the relevant solvated and bound states of the ligand. This which is the basis of …
Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field
The interactions between metal ions and proteins are ubiquitous in biology. The selective
binding of metal ions has a variety of regulatory functions. Therefore, there is a need to …
binding of metal ions has a variety of regulatory functions. Therefore, there is a need to …
QresFEP: an automated protocol for free energy calculations of protein mutations in Q
W Jespers, GV Isaksen, TAH Andberg… - Journal of Chemical …, 2019 - ACS Publications
Predicting the effect of single-point mutations on protein stability or protein–ligand binding is
a major challenge in computational biology. Free energy calculations constitute the most …
a major challenge in computational biology. Free energy calculations constitute the most …
Solvation free energy of the proton in acetonitrile
A Malloum, J Conradie - Journal of Molecular Liquids, 2021 - Elsevier
Solvation free energy of the proton in solution is used to describe proton transfer processes
in that solution. In addition, the solvation free energy of the proton is involved in several …
in that solution. In addition, the solvation free energy of the proton is involved in several …