A guide to the natural history of freshwater lake bacteria

RJ Newton, SE Jones, A Eiler… - Microbiology and …, 2011 - Am Soc Microbiol
Freshwater bacteria are at the hub of biogeochemical cycles and control water quality in
lakes. Despite this, little is known about the identity and ecology of functionally significant …

The biology of habitat dominance; can microbes behave as weeds?

JA Cray, ANW Bell, P Bhaganna… - Microbial …, 2013 - Wiley Online Library
Competition between microbial species is a product of, yet can lead to a reduction in, the
microbial diversity of specific habitats. Microbial habitats can resemble ecological …

Coherent dynamics and association networks among lake bacterioplankton taxa

A Eiler, F Heinrich, S Bertilsson - The ISME journal, 2012 - academic.oup.com
Bacteria have important roles in freshwater food webs and in the cycling of elements in the
ecosystem. Yet specific ecological features of individual phylogenetic groups and …

Metagenome-assembled genomes uncover a global brackish microbiome

LW Hugerth, J Larsson, J Alneberg, MV Lindh… - Genome biology, 2015 - Springer
Background Microbes are main drivers of biogeochemical cycles in oceans and lakes.
Although the genome is a foundation for understanding the metabolism, ecology and …

Application of Illumina next‐generation sequencing to characterize the bacterial community of the Upper Mississippi River

C Staley, T Unno, TJ Gould, B Jarvis… - Journal of Applied …, 2013 - academic.oup.com
Aims A next‐generation, Illumina‐based sequencing approach was used to characterize the
bacterial community at ten sites along the Upper Mississippi River to evaluate shifts in the …

Candidatus Accumulibacter” Population Structure in Enhanced Biological Phosphorus Removal Sludges as Revealed by Polyphosphate Kinase Genes

S He, DL Gall, KD McMahon - Applied and environmental …, 2007 - Am Soc Microbiol
We investigated the fine-scale population structure of the “Candidatus Accumulibacter”
lineage in enhanced biological phosphorus removal (EBPR) systems using the …

Effects of spatial variability and relic DNA removal on the detection of temporal dynamics in soil microbial communities

P Carini, M Delgado-Baquerizo, ELS Hinckley… - MBio, 2020 - Am Soc Microbiol
Few studies have comprehensively investigated the temporal variability in soil microbial
communities despite widespread recognition that the belowground environment is dynamic …

Effects of algal and terrestrial carbon on methane production rates and methanogen community structure in a temperate lake sediment

WE West, JJ Coloso, SE Jones - Freshwater Biology, 2012 - Wiley Online Library
Sources of atmospheric CH4 are both naturally occurring and anthropogenic. In fact, some
anthropogenic activities may influence the production of CH4 from natural sources, such as …

Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession

T Shabarova, MM Salcher, P Porcal, P Znachor… - Nature …, 2021 - nature.com
Small lakes and ponds occupy an enormous surface area of inland freshwater and
represent an important terrestrial–water interface. Disturbances caused by extreme weather …

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

A Shade, AD Kent, SE Jones… - Limnology and …, 2007 - Wiley Online Library
We investigated patterns of intra‐and interannual change in pelagic bacterial community
composition (BCC, assessed using automated ribosomal intergenic spacer analysis) over …