Graph neural network approaches for drug-target interactions
Developing new drugs remains prohibitively expensive, time-consuming, and often involves
safety issues. Accurate prediction of drug-target interactions (DTIs) can guide the drug …
safety issues. Accurate prediction of drug-target interactions (DTIs) can guide the drug …
Deep learning in virtual screening: recent applications and developments
TB Kimber, Y Chen, A Volkamer - International journal of molecular …, 2021 - mdpi.com
Drug discovery is a cost and time-intensive process that is often assisted by computational
methods, such as virtual screening, to speed up and guide the design of new compounds …
methods, such as virtual screening, to speed up and guide the design of new compounds …
[HTML][HTML] Deep learning methods in protein structure prediction
M Torrisi, G Pollastri, Q Le - Computational and Structural Biotechnology …, 2020 - Elsevier
Abstract Protein Structure Prediction is a central topic in Structural Bioinformatics. Since
the'60s statistical methods, followed by increasingly complex Machine Learning and recently …
the'60s statistical methods, followed by increasingly complex Machine Learning and recently …
Drug–target affinity prediction using graph neural network and contact maps
Computer-aided drug design uses high-performance computers to simulate the tasks in drug
design, which is a promising research area. Drug–target affinity (DTA) prediction is the most …
design, which is a promising research area. Drug–target affinity (DTA) prediction is the most …
Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13
Predicting residue‐residue distance relationships (eg, contacts) has become the key
direction to advance protein structure prediction since 2014 CASP11 experiment, while …
direction to advance protein structure prediction since 2014 CASP11 experiment, while …
Deep learning-based advances in protein structure prediction
Obtaining an accurate description of protein structure is a fundamental step toward
understanding the underpinning of biology. Although recent advances in experimental …
understanding the underpinning of biology. Although recent advances in experimental …
Protein structure prediction: conventional and deep learning perspectives
VA Jisna, PB Jayaraj - The protein journal, 2021 - Springer
Protein structure prediction is a way to bridge the sequence-structure gap, one of the main
challenges in computational biology and chemistry. Predicting any protein's accurate …
challenges in computational biology and chemistry. Predicting any protein's accurate …
Compound–protein interaction prediction by deep learning: databases, descriptors and models
The screening of compound–protein interactions (CPIs) is one of the most crucial steps in
finding hit and lead compounds. Deep learning (DL) methods for CPI prediction can address …
finding hit and lead compounds. Deep learning (DL) methods for CPI prediction can address …
NHGNN-DTA: a node-adaptive hybrid graph neural network for interpretable drug–target binding affinity prediction
H He, G Chen, CYC Chen - Bioinformatics, 2023 - academic.oup.com
Motivation Large-scale prediction of drug–target affinity (DTA) plays an important role in
drug discovery. In recent years, machine learning algorithms have made great progress in …
drug discovery. In recent years, machine learning algorithms have made great progress in …
Hierarchical graph representation learning for the prediction of drug-target binding affinity
Computationally predicting drug-target binding affinity (DTA) has attracted increasing
attention due to its benefit for accelerating drug discovery. Currently, numerous deep …
attention due to its benefit for accelerating drug discovery. Currently, numerous deep …