The microbial nitrogen-cycling network
Nitrogen is an essential component of all living organisms and the main nutrient limiting life
on our planet. By far, the largest inventory of freely accessible nitrogen is atmospheric …
on our planet. By far, the largest inventory of freely accessible nitrogen is atmospheric …
Global nitrogen cycle: critical enzymes, organisms, and processes for nitrogen budgets and dynamics
Nitrogen (N) is used in many of life's fundamental biomolecules, and it is also a participant in
environmental redox chemistry. Biogeochemical processes control the amount and form of N …
environmental redox chemistry. Biogeochemical processes control the amount and form of N …
Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem
Ecological theory suggests that habitat disturbance differentially influences distributions of
habitat generalist and specialist species. While well-established for macroorganisms, this …
habitat generalist and specialist species. While well-established for macroorganisms, this …
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …
Charting the complexity of the marine microbiome through single-cell genomics
Marine bacteria and archaea play key roles in global biogeochemistry. To improve our
understanding of this complex microbiome, we employed single-cell genomics and a …
understanding of this complex microbiome, we employed single-cell genomics and a …
Processes and microorganisms involved in the marine nitrogen cycle: knowledge and gaps
Nitrogen (N) is a key element for life in the oceans. It controls primary productivity in many
parts of the global ocean, consequently playing a crucial role in the uptake of atmospheric …
parts of the global ocean, consequently playing a crucial role in the uptake of atmospheric …
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles
Microbial communities are essential components of aquatic ecosystems through their
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …
Genomes OnLine Database (GOLD) v. 6: data updates and feature enhancements
S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Genomes Online Database (GOLD)(https://gold. jgi. doe. gov) is a manually
curated data management system that catalogs sequencing projects with associated …
curated data management system that catalogs sequencing projects with associated …
Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series
YC Yeh, JA Fuhrman - ISME communications, 2022 - academic.oup.com
Community dynamics are central in microbial ecology, yet we lack studies comparing
diversity patterns among marine protists and prokaryotes over depth and multiple years …
diversity patterns among marine protists and prokaryotes over depth and multiple years …
The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments
Y Nishimura, S Yoshizawa - Scientific Data, 2022 - nature.com
Marine microorganisms are immensely diverse and play fundamental roles in global
geochemical cycling. Recent metagenome-assembled genome studies, with particular …
geochemical cycling. Recent metagenome-assembled genome studies, with particular …