Protein Data Bank (PDB): the single global macromolecular structure archive
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …
determined 3D structures of biological macromolecules and their complexes––was …
Pfam: the protein families database
Pfam, available via servers in the UK (http://pfam. sanger. ac. uk/) and the USA (http://pfam.
janelia. org/), is a widely used database of protein families, containing 14 831 manually …
janelia. org/), is a widely used database of protein families, containing 14 831 manually …
EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species
Enhancers are distal cis-regulatory elements that activate the transcription of their target
genes. They regulate a wide range of important biological functions and processes …
genes. They regulate a wide range of important biological functions and processes …
RCSB Protein Data Bank: architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive
Abstract The US Research Collaboratory for Structural Bioinformatics Protein Data Bank
(RCSB PDB) serves many millions of unique users worldwide by delivering experimentally …
(RCSB PDB) serves many millions of unique users worldwide by delivering experimentally …
ACPYPE-Antechamber python parser interface
AW Sousa da Silva, WF Vranken - BMC research notes, 2012 - Springer
Abstract Background ACPYPE (or AnteChamber PYthon Parser interfacE) is a wrapper
script around the ANTECHAMBER software that simplifies the generation of small molecule …
script around the ANTECHAMBER software that simplifies the generation of small molecule …
ChEMBL: a large-scale bioactivity database for drug discovery
Abstract ChEMBL is an Open Data database containing binding, functional and ADMET
information for a large number of drug-like bioactive compounds. These data are manually …
information for a large number of drug-like bioactive compounds. These data are manually …
OPM database and PPM web server: resources for positioning of proteins in membranes
MA Lomize, ID Pogozheva, H Joo… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Orientations of Proteins in Membranes (OPM) database is a curated web
resource that provides spatial positions of membrane-bound peptides and proteins of known …
resource that provides spatial positions of membrane-bound peptides and proteins of known …
UniProt Knowledgebase: a hub of integrated protein data
M Magrane, UP Consortium - Database, 2011 - academic.oup.com
Abstract The UniProt Knowledgebase (UniProtKB) acts as a central hub of protein
knowledge by providing a unified view of protein sequence and functional information …
knowledge by providing a unified view of protein sequence and functional information …
The MemProtMD database: a resource for membrane-embedded protein structures and their lipid interactions
TD Newport, MSP Sansom… - Nucleic acids research, 2019 - academic.oup.com
Integral membrane proteins fulfil important roles in many crucial biological processes,
including cell signalling, molecular transport and bioenergetic processes. Advancements in …
including cell signalling, molecular transport and bioenergetic processes. Advancements in …
Phospho. ELM: a database of phosphorylation sites—update 2011
The Phospho. ELM resource (http://phospho. elm. eu. org) is a relational database designed
to store in vivo and in vitro phosphorylation data extracted from the scientific literature and …
to store in vivo and in vitro phosphorylation data extracted from the scientific literature and …