[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
Advantages and limitations of environmental DNA/RNA tools for marine biosecurity: management and surveillance of non-indigenous species
To enable successful management of marine bioinvasions, timely and robust scientific
advice is required. This knowledge should inform managers and stakeholders on the …
advice is required. This knowledge should inform managers and stakeholders on the …
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
High animal and plant richness in tropical rainforest communities has long intrigued
naturalists. It is unknown if similar hyperdiversity patterns are reflected at the microbial scale …
naturalists. It is unknown if similar hyperdiversity patterns are reflected at the microbial scale …
Metatranscriptomic census of active protists in soils
The high numbers and diversity of protists in soil systems have long been presumed, but
their true diversity and community composition have remained largely concealed. Traditional …
their true diversity and community composition have remained largely concealed. Traditional …
Environmental monitoring: inferring the diatom index from next-generation sequencing data
JA Visco, L Apothéloz-Perret-Gentil… - … science & technology, 2015 - ACS Publications
Diatoms are widely used as bioindicators for the assessment of water quality in rivers and
streams. Classically, the diatom biotic indices are based on the relative abundance of …
streams. Classically, the diatom biotic indices are based on the relative abundance of …
[HTML][HTML] Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes
Accurately identifying the species present in an ecosystem is vital to lake managers and
successful bioassessment programs. This is particularly important when monitoring …
successful bioassessment programs. This is particularly important when monitoring …
Protist metabarcoding and environmental biomonitoring: time for change
J Pawlowski, F Lejzerowicz… - European Journal of …, 2016 - Elsevier
High-throughput amplicon sequencing of environmental DNA and/or RNA proved to be a
powerful tool to describe protist diversity. This new approach called also the metabarcoding …
powerful tool to describe protist diversity. This new approach called also the metabarcoding …
Perspectives from ten years of protist studies by high‐throughput metabarcoding
During the last decade, high‐throughput metabarcoding became routine for analyzing
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
Effects of long‐term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach
To understand the fine‐scale effects of changes in nutrient availability on eukaryotic soil
microorganisms communities, a multiple barcoding approach was used to analyse soil …
microorganisms communities, a multiple barcoding approach was used to analyse soil …
Is metabarcoding suitable for estuarine plankton monitoring? A comparative study with microscopy
Metabarcoding is becoming an increasingly valuable alternative approach to biodiversity
assessment, due to the combination of extreme sensitivity and potential for the highest …
assessment, due to the combination of extreme sensitivity and potential for the highest …