Modeling molecular interactions in water: From pairwise to many-body potential energy functions
Almost 50 years have passed from the first computer simulations of water, and a large
number of molecular models have been proposed since then to elucidate the unique …
number of molecular models have been proposed since then to elucidate the unique …
Adaptive quantum/molecular mechanics: what have we learned, where are we, and where do we go from here?
Adaptive quantum‐mechanics/molecular‐mechanics (QM/MM) methods feature on‐the‐fly
reclassification of atoms as QM or MM during a molecular dynamics (MD) simulation …
reclassification of atoms as QM or MM during a molecular dynamics (MD) simulation …
Effect of collective dynamics and anharmonicity on entropy in heterogenous catalysis: Building the case for advanced molecular simulations
We present a perspective on the computational determination of entropy and its effects and
consequences on heterogeneous catalysis. Special attention is paid to the role of …
consequences on heterogeneous catalysis. Special attention is paid to the role of …
General many-body framework for data-driven potentials with arbitrary quantum mechanical accuracy: Water as a case study
We present a general framework for the development of data-driven many-body (MB)
potential energy functions (MB-QM PEFs) that represent the interactions between small …
potential energy functions (MB-QM PEFs) that represent the interactions between small …
Toward the atomic scale simulation of intricate acidic aluminosilicate catalysts
C Chizallet - Acs Catalysis, 2020 - ACS Publications
Zeolites are nanoporous aluminosilicates with well-defined crystalline structures, considered
key assets in heterogeneous catalysis, with a broad range of industrial applications …
key assets in heterogeneous catalysis, with a broad range of industrial applications …
PyDFT-QMMM: A modular, extensible software framework for DFT-based QM/MM molecular dynamics
JP Pederson, JG McDaniel - The Journal of Chemical Physics, 2024 - pubs.aip.org
PyDFT-QMMM is a Python-based package for performing hybrid quantum
mechanics/molecular mechanics (QM/MM) simulations at the density functional level of …
mechanics/molecular mechanics (QM/MM) simulations at the density functional level of …
Connecting gas-phase computational chemistry to condensed phase kinetic modeling: The state-of-the-art
M Edeleva, PHM Van Steenberge, MK Sabbe… - Polymers, 2021 - mdpi.com
In recent decades, quantum chemical calculations (QCC) have increased in accuracy, not
only providing the ranking of chemical reactivities and energy barriers (eg, for optimal …
only providing the ranking of chemical reactivities and energy barriers (eg, for optimal …
Adaptive quantum mechanics/molecular mechanics methods
M Zheng, MP Waller - Wiley Interdisciplinary Reviews …, 2016 - Wiley Online Library
Multiscale methods have enjoyed a well‐celebrated place in the computational chemists'
toolbox, while the next generation of so‐called adaptive quantum mechanics/molecular …
toolbox, while the next generation of so‐called adaptive quantum mechanics/molecular …
[HTML][HTML] Enhanced semiempirical QM methods for biomolecular interactions
ND Yilmazer, M Korth - Computational and structural biotechnology journal, 2015 - Elsevier
Recent successes and failures of the application of 'enhanced'semiempirical QM (SQM)
methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) …
methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) …
Size-consistent multipartitioning QM/MM: A stable and efficient adaptive QM/MM method
HC Watanabe, T Kubař, M Elstner - Journal of chemical theory …, 2014 - ACS Publications
We propose a new adaptive QM/MM method, the size-consistent multipartitioning (SCMP)
QM/MM scheme, which enables stable and computationally efficient QM/MM simulations. A …
QM/MM scheme, which enables stable and computationally efficient QM/MM simulations. A …