Poly(N‐isopropylacrylamide) Phase Diagrams: Fifty Years of Research

A Halperin, M Kröger, FM Winnik - … Chemie International Edition, 2015 - Wiley Online Library
Abstract In 1968, Heskins and Guillet published the first systematic study of the phase
diagram of poly (N‐isopropylacrylamide)(PNIPAM), at the time a “young polymer” first …

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

J Dekker, MA Marti-Renom, LA Mirny - Nature Reviews Genetics, 2013 - nature.com
How DNA is organized in three dimensions inside the cell nucleus and how this affects the
ways in which cells access, read and interpret genetic information are among the longest …

[HTML][HTML] Chromosome conformation capture and beyond: toward an integrative view of chromosome structure and function

RP McCord, N Kaplan, L Giorgetti - Molecular cell, 2020 - cell.com
Rapidly developing technologies have recently fueled an exciting era of discovery in the
field of chromosome structure and nuclear organization. In addition to chromosome …

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

E Lieberman-Aiden, NL Van Berkum, L Williams… - science, 2009 - science.org
We describe Hi-C, a method that probes the three-dimensional architecture of whole
genomes by coupling proximity-based ligation with massively parallel sequencing. We …

Mechanisms of chromosome folding and nuclear organization: their interplay and open questions

L Mirny, J Dekker - Cold Spring Harbor perspectives in …, 2022 - cshperspectives.cshlp.org
Microscopy and genomic approaches provide detailed descriptions of the three-dimensional
folding of chromosomes and nuclear organization. The fundamental question is how activity …

Transferable model for chromosome architecture

M Di Pierro, B Zhang, EL Aiden… - Proceedings of the …, 2016 - National Acad Sciences
In vivo, the human genome folds into a characteristic ensemble of 3D structures. The
mechanism driving the folding process remains unknown. We report a theoretical model for …

Intermittent search strategies

O Bénichou, C Loverdo, M Moreau, R Voituriez - Reviews of Modern Physics, 2011 - APS
This review examines intermittent target search strategies, which combine phases of slow
motion, allowing the searcher to detect the target, and phases of fast motion during which …

The fractal globule as a model of chromatin architecture in the cell

LA Mirny - Chromosome research, 2011 - Springer
The fractal globule is a compact polymer state that emerges during polymer condensation as
a result of topological constraints which prevent one region of the chain from passing across …

Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome

DB Brückner, H Chen, L Barinov, B Zoller, T Gregor - Science, 2023 - science.org
Chromosomes in the eukaryotic nucleus are highly compacted. However, for many
functional processes, including transcription initiation, the pairwise motion of distal …

A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

K Abramo, AL Valton, SV Venev, H Ozadam… - Nature cell …, 2019 - nature.com
Chromosome folding is modulated as cells progress through the cell cycle. During mitosis,
condensins fold chromosomes into helical loop arrays. In interphase, the cohesin complex …