Learning from co-expression networks: possibilities and challenges
EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …
organization, function and evolution of plant genes is essential to disentangle important …
Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics
H Sakai, SS Lee, T Tanaka, H Numa… - Plant and Cell …, 2013 - academic.oup.com
Abstract The Rice Annotation Project Database (RAP-DB, http://rapdb. dna. affrc. go. jp/) has
been providing a comprehensive set of gene annotations for the genome sequence of rice …
been providing a comprehensive set of gene annotations for the genome sequence of rice …
Integrated omics analysis of specialized metabolism in medicinal plants
Medicinal plants are a rich source of highly diverse specialized metabolites with important
pharmacological properties. Until recently, plant biologists were limited in their ability to …
pharmacological properties. Until recently, plant biologists were limited in their ability to …
RiceXPro version 3.0: expanding the informatics resource for rice transcriptome
Y Sato, H Takehisa, K Kamatsuki, H Minami… - Nucleic acids …, 2013 - academic.oup.com
A wide range of resources on gene expression profiling enhance various strategies in plant
molecular biology particularly in characterization of gene function. We have updated our …
molecular biology particularly in characterization of gene function. We have updated our …
Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice
Rice is one of the most important stable food as well as a monocotyledonous model
organism for the plant research community. Here, we present RED (Rice Expression …
organism for the plant research community. Here, we present RED (Rice Expression …
Advances in omics and bioinformatics tools for systems analyses of plant functions
K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …
various plant functions. Recent game-changing sequencing technologies have revitalized …
The plant ontology as a tool for comparative plant anatomy and genomic analyses
Abstract The Plant Ontology (PO; http://www. plantontology. org/) is a publicly available,
collaborative effort to develop and maintain a controlled, structured vocabulary ('ontology') of …
collaborative effort to develop and maintain a controlled, structured vocabulary ('ontology') of …
Cytosolic glutamine synthetase1; 2 is responsible for the primary assimilation of ammonium in rice roots
K Funayama, S Kojima… - Plant and cell …, 2013 - academic.oup.com
Among three genes for cytosolic glutamine synthetase (OsGS1; 1, OsGS1; 2 and OsGS1; 3)
in rice (Oryza sativa L.) plants, the OsGS1; 2 gene is known to be mainly expressed in …
in rice (Oryza sativa L.) plants, the OsGS1; 2 gene is known to be mainly expressed in …
The rice oligonucleotide array database: an atlas of rice gene expression
Background Microarray technologies facilitate high-throughput gene expression analysis.
However, the diversity of platforms for rice gene expression analysis hinders efficient …
However, the diversity of platforms for rice gene expression analysis hinders efficient …