Mobile genetic element flexibility as an underlying principle to bacterial evolution
AJ Weisberg, JH Chang - Annual Review of Microbiology, 2023 - annualreviews.org
Mobile genetic elements are key to the evolution of bacteria and traits that affect host and
ecosystem health. Here, we use a framework of a hierarchical and modular system that …
ecosystem health. Here, we use a framework of a hierarchical and modular system that …
Transcription factors: from enhancer binding to developmental control
F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …
expression, which give rise to stereotypically patterned embryos even in the presence of …
Controlling gene expression with deep generative design of regulatory DNA
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
An atlas of human metabolism
Genome-scale metabolic models (GEMs) are valuable tools to study metabolism and
provide a scaffold for the integrative analysis of omics data. Researchers have developed …
provide a scaffold for the integrative analysis of omics data. Researchers have developed …
[HTML][HTML] Common disease is more complex than implied by the core gene omnigenic model
The evidence that most adult-onset common diseases have a polygenic genetic architecture
fully consistent with robust biological systems supported by multiple back-up mechanisms is …
fully consistent with robust biological systems supported by multiple back-up mechanisms is …
Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders
Genetic and genomic approaches have implicated hundreds of genetic loci in
neurodevelopmental disorders and neurodegeneration, but mechanistic understanding …
neurodevelopmental disorders and neurodegeneration, but mechanistic understanding …
Explaining intraspecific diversity in plant secondary metabolites in an ecological context
Plant secondary metabolites (PSM s) are ubiquitous in plants and play many ecological
roles. Each compound can vary in presence and/or quantity, and the composition of the …
roles. Each compound can vary in presence and/or quantity, and the composition of the …
Evolutionary psychiatry: foundations, progress and challenges
RM Nesse - World Psychiatry, 2023 - Wiley Online Library
Evolutionary biology provides a crucial foundation for medicine and behavioral science that
has been missing from psychiatry. Its absence helps to explain slow progress; its advent …
has been missing from psychiatry. Its absence helps to explain slow progress; its advent …
Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors
Auxin regulates numerous plant developmental processes by controlling gene expression
via a family of functionally distinct DNA-binding auxin response factors (ARFs), yet the …
via a family of functionally distinct DNA-binding auxin response factors (ARFs), yet the …
[HTML][HTML] Evolvability as a function of purifying selection in TEM-1 β-lactamase
Evolvability—the capacity to generate beneficial heritable variation—is a central property of
biological systems. However, its origins and modulation by environmental factors have not …
biological systems. However, its origins and modulation by environmental factors have not …