Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Protein degradation–an alternative respiratory substrate for stressed plants

WL Araújo, T Tohge, K Ishizaki, CJ Leaver… - Trends in plant …, 2011 - cell.com
In cellular circumstances under which carbohydrates are scarce, plants can metabolize
proteins and lipids as alternative respiratory substrates. Respiration of protein is less …

ATTED-II in 2018: a plant coexpression database based on investigation of the statistical property of the mutual rank index

T Obayashi, Y Aoki, S Tadaka, Y Kagaya… - Plant and Cell …, 2018 - academic.oup.com
Abstract ATTED-II (http://atted. jp) is a coexpression database for plant species to aid in the
discovery of relationships of unknown genes within a species. As an advanced …

A peptide hormone and its receptor protein kinase regulate plant cell expansion

M Haruta, G Sabat, K Stecker, BB Minkoff… - Science, 2014 - science.org
Plant cells are immobile; thus, plant growth and development depend on cell expansion
rather than cell migration. The molecular mechanism by which the plasma membrane …

ATTED-II v11: a plant gene coexpression database using a sample balancing technique by subagging of principal components

T Obayashi, H Hibara, Y Kagaya, Y Aoki… - Plant and Cell …, 2022 - academic.oup.com
Abstract ATTED-II (https://atted. jp) is a gene coexpression database for nine plant species
based on publicly available RNAseq and microarray data. One of the challenges in …

A glucosinolate metabolism pathway in living plant cells mediates broad-spectrum antifungal defense

P Bednarek, M Pislewska-Bednarek, A Svatoš… - Science, 2009 - science.org
Selection pressure exerted by insects and microorganisms shapes the diversity of plant
secondary metabolites. We identified a metabolic pathway for glucosinolates, known insect …

Integrated omics analysis of specialized metabolism in medicinal plants

A Rai, K Saito, M Yamazaki - The Plant Journal, 2017 - Wiley Online Library
Medicinal plants are a rich source of highly diverse specialized metabolites with important
pharmacological properties. Until recently, plant biologists were limited in their ability to …

Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis

G Rubin, T Tohge, F Matsuda, K Saito… - The Plant …, 2009 - academic.oup.com
Nitrogen (N) and nitrate (NO3−) per se regulate many aspects of plant metabolism, growth,
and development. N/NO3− also suppresses parts of secondary metabolism, including …

NDH-1 and NDH-2 plastoquinone reductases in oxygenic photosynthesis

G Peltier, EM Aro, T Shikanai - Annual review of plant biology, 2016 - annualreviews.org
Oxygenic photosynthesis converts solar energy into chemical energy in the chloroplasts of
plants and microalgae as well as in prokaryotic cyanobacteria using a complex machinery …

Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis

MY Hirai, K Sugiyama, Y Sawada… - Proceedings of the …, 2007 - National Acad Sciences
Understanding plant metabolism as an integrated system is essential for metabolic
engineering aimed at the effective production of compounds useful to human life and the …