Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Text mining for adverse drug events: the promise, challenges, and state of the art

R Harpaz, A Callahan, S Tamang, Y Low, D Odgers… - Drug safety, 2014 - Springer
Text mining is the computational process of extracting meaningful information from large
amounts of unstructured text. It is emerging as a tool to leverage underutilized data sources …

A curated and standardized adverse drug event resource to accelerate drug safety research

JM Banda, L Evans, RS Vanguri, NP Tatonetti… - Scientific data, 2016 - nature.com
Identification of adverse drug reactions (ADRs) during the post-marketing phase is one of
the most important goals of drug safety surveillance. Spontaneous reporting systems (SRS) …

Evaluating large-scale propensity score performance through real-world and synthetic data experiments

Y Tian, MJ Schuemie… - International journal of …, 2018 - academic.oup.com
Background Propensity score adjustment is a popular approach for confounding control in
observational studies. Reliable frameworks are needed to determine relative propensity …

Text and data mining techniques in adverse drug reaction detection

S Karimi, C Wang, A Metke-Jimenez, R Gaire… - ACM Computing …, 2015 - dl.acm.org
We review data mining and related computer science techniques that have been studied in
the area of drug safety to identify signals of adverse drug reactions from different data …

[HTML][HTML] Accuracy of an automated knowledge base for identifying drug adverse reactions

EA Voss, RD Boyce, PB Ryan, J van der Lei… - Journal of biomedical …, 2017 - Elsevier
Introduction Drug safety researchers seek to know the degree of certainty with which a
particular drug is associated with an adverse drug reaction. There are different sources of …

Improving reproducibility by using high-throughput observational studies with empirical calibration

MJ Schuemie, PB Ryan, G Hripcsak… - … of the Royal …, 2018 - royalsocietypublishing.org
Concerns over reproducibility in science extend to research using existing healthcare data;
many observational studies investigating the same topic produce conflicting results, even …

Social media listening for routine post-marketing safety surveillance

GE Powell, HA Seifert, T Reblin, PJ Burstein, J Blowers… - Drug safety, 2016 - Springer
Introduction Post-marketing safety surveillance primarily relies on data from spontaneous
adverse event reports, medical literature, and observational databases. Limitations of these …

Combination of deep recurrent neural networks and conditional random fields for extracting adverse drug reactions from user reviews

E Tutubalina, S Nikolenko - Journal of healthcare engineering, 2017 - Wiley Online Library
Adverse drug reactions (ADRs) are an essential part of the analysis of drug use, measuring
drug use benefits, and making policy decisions. Traditional channels for identifying ADRs …

A new paradigm in adverse drug reaction reporting: consolidating the evidence for an intervention to improve reporting

R Li, K Curtis, ST Zaidi, C Van… - Expert Opinion on Drug …, 2022 - Taylor & Francis
Introduction Adverse drug reaction (ADR) under-reporting is highly prevalent internationally
and interventions created to address this problem have only been temporarily successful …