[HTML][HTML] Computational approaches streamlining drug discovery

AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …

Chiral molecules and the electron spin

R Naaman, Y Paltiel, DH Waldeck - Nature Reviews Chemistry, 2019 - nature.com
The electron's spin is essential to the stability of matter, and control over the spin opens up
avenues for manipulating the properties of molecules and materials. The Pauli exclusion …

[HTML][HTML] Protein–ligand docking in the machine-learning era

C Yang, EA Chen, Y Zhang - Molecules, 2022 - mdpi.com
Molecular docking plays a significant role in early-stage drug discovery, from structure-
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …

The electron's spin and molecular chirality–how are they related and how do they affect life processes?

K Michaeli, N Kantor-Uriel, R Naaman… - Chemical Society …, 2016 - pubs.rsc.org
The recently discovered chiral induced spin selectivity (CISS) effect gives rise to a spin
selective electron transmission through biomolecules. Here we review the mechanism …

Eigenvector centrality for characterization of protein allosteric pathways

CFA Negre, UN Morzan… - Proceedings of the …, 2018 - National Acad Sciences
Determining the principal energy-transfer pathways responsible for allosteric communication
in biomolecules remains challenging, partially due to the intrinsic complexity of the systems …

Investigating cryptic binding sites by molecular dynamics simulations

A Kuzmanic, GR Bowman… - Accounts of chemical …, 2020 - ACS Publications
Conspectus This Account highlights recent advances and discusses major challenges in
investigations of cryptic (hidden) binding sites by molecular simulations. Cryptic binding …

Chirality-induced spin polarization places symmetry constraints on biomolecular interactions

A Kumar, E Capua, MK Kesharwani… - Proceedings of the …, 2017 - National Acad Sciences
Noncovalent interactions between molecules are key for many biological processes.
Necessarily, when molecules interact, the electronic charge in each of them is redistributed …

Allosteric methods and their applications: facilitating the discovery of allosteric drugs and the investigation of allosteric mechanisms

S Lu, Q Shen, J Zhang - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Allostery, or allosteric regulation, is the phenomenon in which protein functional
activity is altered by the binding of an effector at an allosteric site that is topographically …

Allosteric modulator discovery: from serendipity to structure-based design

S Lu, X He, D Ni, J Zhang - Journal of medicinal chemistry, 2019 - ACS Publications
Allosteric modulators bound to structurally diverse allosteric sites can achieve better
pharmacological advantages than orthosteric ligands. The discovery of allosteric …

Along the allostery stream: Recent advances in computational methods for allosteric drug discovery

D Ni, Z Chai, Y Wang, M Li, Z Yu, Y Liu… - Wiley …, 2022 - Wiley Online Library
Allostery is a universal, biological phenomenon in which orthosteric sites are fine‐tuned by
topologically distal allosteric sites triggered by perturbations, such as ligand binding, residue …