Broadening the definition of bacterial small RNAs: characteristics and mechanisms of action
MC Carrier, D Lalaouna, E Massé - Annual review of …, 2018 - annualreviews.org
The first report of trans-acting RNA-based regulation in bacterial cells dates back to 1984.
Subsequent studies in diverse bacteria unraveled shared properties of trans-acting small …
Subsequent studies in diverse bacteria unraveled shared properties of trans-acting small …
Engineering Clostridium organisms as microbial cell-factories: challenges & opportunities
Clostridium organisms are of major importance in the development of technologies to
produce biofuels and chemicals. They are uniquely capable of utilizing virtually all biomass …
produce biofuels and chemicals. They are uniquely capable of utilizing virtually all biomass …
RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression
SW McKellar, I Ivanova, P Arede, RL Zapf… - Nature …, 2022 - nature.com
Methicillin-resistant Staphylococcus aureus (MRSA) is a bacterial pathogen responsible for
significant human morbidity and mortality. Post-transcriptional regulation by small RNAs …
significant human morbidity and mortality. Post-transcriptional regulation by small RNAs …
A tRNA-derived fragment present in E. coli OMVs regulates host cell gene expression and proliferation
I Diallo, J Ho, M Lambert, A Benmoussa… - PLoS …, 2022 - journals.plos.org
RNA-sequencing has led to a spectacular increase in the repertoire of bacterial sRNAs and
improved our understanding of their biological functions. Bacterial sRNAs have also been …
improved our understanding of their biological functions. Bacterial sRNAs have also been …
Learning the regulatory code of gene expression
Data-driven machine learning is the method of choice for predicting molecular phenotypes
from nucleotide sequence, modeling gene expression events including protein-DNA …
from nucleotide sequence, modeling gene expression events including protein-DNA …
Transfer RNA-derived fragments, the underappreciated regulatory small RNAs in microbial pathogenesis
Z Li, BA Stanton - Frontiers in Microbiology, 2021 - frontiersin.org
In eukaryotic organisms, transfer RNA (tRNA)-derived fragments have diverse biological
functions. Considering the conserved sequences of tRNAs, it is not surprising that …
functions. Considering the conserved sequences of tRNAs, it is not surprising that …
The potential of cold-shock promoters for the expression of recombinant proteins in microbes and mammalian cells
Y Bartolo-Aguilar, C Chávez-Cabrera… - Journal of Genetic …, 2022 - Springer
Background Low-temperature expression of recombinant proteins may be advantageous to
support their proper folding and preserve bioactivity. The generation of expression vectors …
support their proper folding and preserve bioactivity. The generation of expression vectors …
The Transcription Unit Architecture of Streptomyces lividans TK24
Streptomyces lividans is an attractive host for production of heterologous proteins and
secondary metabolites of other Streptomyces species. To fully harness the industrial …
secondary metabolites of other Streptomyces species. To fully harness the industrial …
Modulation of AggR levels reveals features of virulence regulation in enteroaggregative E. coli
A Prieto, M Bernabeu, JF Sánchez-Herrero… - Communications …, 2021 - nature.com
Enteroaggregative Escherichia coli (EAEC) strains are one of the diarrheagenic pathotypes.
EAEC strains harbor a virulence plasmid (pAA2) that encodes, among other virulence …
EAEC strains harbor a virulence plasmid (pAA2) that encodes, among other virulence …
Primary transcriptome analysis reveals importance of IS elements for the shaping of the transcriptional landscape of Bordetella pertussis
F Amman, A D'Halluin, R Antoine, L Huot, I Bibova… - RNA biology, 2018 - Taylor & Francis
Bordetella pertussis is the causative agent of whooping cough, a respiratory disease still
considered as a major public health threat and for which recent re-emergence has been …
considered as a major public health threat and for which recent re-emergence has been …