The current status on the taxonomy of Pseudomonas revisited: an update

A Peix, MH Ramírez-Bahena, E Velázquez - Infection, Genetics and …, 2018 - Elsevier
The genus Pseudomonas described in 1894 is one of the most diverse and ubiquitous
bacterial genera which encompass species isolated worldwide. In the last years more than …

Biofilm-specific antibiotic resistance

TF Mah - Future microbiology, 2012 - Future Medicine
Bacterial biofilms are the basis of many persistent diseases. The persistence of these
infections is primarily attributed to the increased antibiotic resistance exhibited by the cells …

Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database

GL Winsor, EJ Griffiths, R Lo, BK Dhillon… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Pseudomonas Genome Database (http://www. pseudomonas. com) is well
known for the application of community-based annotation approaches for producing a high …

NCBI prokaryotic genome annotation pipeline

T Tatusova, M DiCuccio, A Badretdin… - Nucleic acids …, 2016 - academic.oup.com
Recent technological advances have opened unprecedented opportunities for large-scale
sequencing and analysis of populations of pathogenic species in disease outbreaks, as well …

Expanded microbial genome coverage and improved protein family annotation in the COG database

MY Galperin, KS Makarova, YI Wolf… - Nucleic acids …, 2015 - academic.oup.com
Microbial genome sequencing projects produce numerous sequences of deduced proteins,
only a small fraction of which have been or will ever be studied experimentally. This leaves …

Precision-engineering the Pseudomonas aeruginosa genome with two-step allelic exchange

LR Hmelo, BR Borlee, H Almblad, ME Love… - Nature protocols, 2015 - nature.com
Allelic exchange is an efficient method of bacterial genome engineering. This protocol
describes the use of this technique to make gene knockouts and knock-ins, as well as single …

The GOA database: gene ontology annotation updates for 2015

RP Huntley, T Sawford… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Gene Ontology Annotation (GOA) resource (http://www. ebi. ac. uk/GOA)
provides evidence-based Gene Ontology (GO) annotations to proteins in the UniProt …

Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

RL Marvig, LM Sommer, S Molin, HK Johansen - Nature genetics, 2015 - nature.com
Little is known about how within-host evolution compares between genotypically different
strains of the same pathogenic species. We sequenced the whole genomes of 474 …

Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization

N Udikovic-Kolic, F Wichmann… - Proceedings of the …, 2014 - National Acad Sciences
The increasing prevalence of antibiotic-resistant bacteria is a global threat to public health.
Agricultural use of antibiotics is believed to contribute to the spread of antibiotic resistance …

Activities at the universal protein resource (UniProt)

UniProt Consortium - Nucleic acids research, 2014 - academic.oup.com
The mission of the Universal Protein Resource (UniProt)(http://www. uniprot. org) is to
provide the scientific community with a comprehensive, high-quality and freely accessible …