[HTML][HTML] AI-based language models powering drug discovery and development
Z Liu, RA Roberts, M Lal-Nag, X Chen, R Huang… - Drug Discovery …, 2021 - Elsevier
The discovery and development of new medicines is expensive, time-consuming, and often
inefficient, with many failures along the way. Powered by artificial intelligence (AI), language …
inefficient, with many failures along the way. Powered by artificial intelligence (AI), language …
Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …
from the large amount of literature is increasingly important. Biomedical named entity …
LitCovid: an open database of COVID-19 literature
Since the outbreak of the current pandemic in 2020, there has been a rapid growth of
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations
Biomedical literature is growing rapidly, making it challenging to curate and extract
knowledge manually. Biomedical natural language processing (BioNLP) techniques that …
knowledge manually. Biomedical natural language processing (BioNLP) techniques that …
[HTML][HTML] Zinc against COVID-19? Symptom surveillance and deficiency risk groups
MP Joachimiak - PLoS neglected tropical diseases, 2021 - journals.plos.org
A wide variety of symptoms is associated with Severe Acute Respiratory Syndrome
Coronavirus 2 (SARS-CoV-2) infection, and these symptoms can overlap with other …
Coronavirus 2 (SARS-CoV-2) infection, and these symptoms can overlap with other …
A survey on event extraction for natural language understanding: Riding the biomedical literature wave
Motivation: The scientific literature embeds an enormous amount of relational knowledge,
encompassing interactions between biomedical entities, like proteins, drugs, and symptoms …
encompassing interactions between biomedical entities, like proteins, drugs, and symptoms …
[HTML][HTML] GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT
There has been significant recent progress in leveraging large-scale gene expression data
to develop foundation models for single-cell biology. Models such as Geneformer and …
to develop foundation models for single-cell biology. Models such as Geneformer and …
EntityBERT: Entity-centric masking strategy for model pretraining for the clinical domain
Transformer-based neural language models have led to breakthroughs for a variety of
natural language processing (NLP) tasks. However, most models are pretrained on general …
natural language processing (NLP) tasks. However, most models are pretrained on general …
[HTML][HTML] Bioformer: an efficient transformer language model for biomedical text mining
Pretrained language models such as Bidirectional Encoder Representations from
Transformers (BERT) have achieved state-of-the-art performance in natural language …
Transformers (BERT) have achieved state-of-the-art performance in natural language …
A literature embedding model for cardiovascular disease prediction using risk factors, symptoms, and genotype information
Accurate prediction of cardiovascular disease (CVD) requires multifaceted information
consisting of not only a patient's medical history, but genomic data, symptoms, lifestyle, and …
consisting of not only a patient's medical history, but genomic data, symptoms, lifestyle, and …