Peptidomics: A review of clinical applications and methodologies

RE Foreman, AL George, F Reimann… - Journal of Proteome …, 2021 - ACS Publications
Improvements in both liquid chromatography (LC) and mass spectrometry (MS)
instrumentation have greatly enhanced proteomic and small molecule metabolomic analysis …

A simple, time-and cost-effective, high-throughput depletion strategy for deep plasma proteomics

A Viode, P van Zalm, KK Smolen, B Fatou… - Science …, 2023 - science.org
We introduce a cost-effective, robust high-throughput–compatible plasma depletion method
enabling in-depth profiling of plasma that detects> 1300 proteins per run with a throughput …

[HTML][HTML] Applying proteomics and integrative “Omics” strategies to decipher the chronic kidney disease-related atherosclerosis

J Tracz, M Luczak - International Journal of Molecular Sciences, 2021 - mdpi.com
Patients with chronic kidney disease (CKD) are at increased risk of atherosclerosis and
premature mortality, mainly due to cardiovascular events. However, well-known risk factors …

Strikingly conserved gene expression changes of polyamine regulating enzymes among various forms of acute and chronic kidney injury

T Sieckmann, G Schley, N Ögel, S Kelterborn… - Kidney International, 2023 - Elsevier
The polyamines spermidine and spermine and their common precursor molecule putrescine
are involved in tissue injury and repair. Here, we test the hypothesis that impaired polyamine …

Sequential precipitation and delipidation enables efficient enrichment of low-molecular weight proteins and peptides from human plasma

N Li, Y Zhou, J Wang, L Niu, Q Zhang… - Journal of proteome …, 2020 - ACS Publications
Low-molecular weight proteins and peptides (LMWPs,< 30 kDa) in human plasma serve as
potential biomarkers or drug targets and are endowed with desirable traits for biological and …

[HTML][HTML] MS-based proteomics of body fluids: the end of the beginning

JM Bader, V Albrecht, M Mann - Molecular & Cellular Proteomics, 2023 - ASBMB
Accurate biomarkers are a crucial and necessary precondition for precision medicine, yet
existing ones are often unspecific and new ones have been very slow to enter the clinic …

[HTML][HTML] On-line coupling of two-phase microelectroextraction to capillary electrophoresis–mass spectrometry for metabolomics analyses

A Oedit, T Hankemeier, PW Lindenburg - Microchemical Journal, 2021 - Elsevier
We have integrated two-phase electroextraction (EE), capillary electrophoresis (CE) and
mass spectrometry (MS) to combine rapid sample extraction, high performance separation …

[HTML][HTML] Alterations of the peptidomic composition of peripheral plasma after portal hypertension correction by transjugular intrahepatic portosystemic shunt

GI Bagarolo, S Bhargava, R Schierwagen, W Gu… - npj Gut and …, 2024 - nature.com
Portal hypertension develops in patients with advanced chronic liver diseases (CLD),
especially cirrhosis and is associated with complications, such as gastrointestinal bleeding …

Prediction modelling with many correlated and zero-inflated predictors: assessing a nonnegative garrote approach

M Gregorich, M Kammer, H Mischak… - arXiv preprint arXiv …, 2024 - arxiv.org
Building prediction models from mass-spectrometry data is challenging due to the
abundance of correlated features with varying degrees of zero-inflation, leading to a …

Proteomic analysis identifies dysregulated proteins in albuminuria: a South African pilot study

S Khoza, JA George, P Naicker, SH Stoychev, J Fabian… - bioRxiv, 2024 - biorxiv.org
Albuminuria may precede decreases in glomerular filtration rate (GFR) and both tests are
insensitive predictors of early stages of kidney disease. Our aim was to characterise the …